CRISPRone

CRISPRone report for GCA_000451525.2_ASM45152v2

♦ Seq 1: AVLH01000035.1 Clostridioides difficile Y358 gcdY358.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 148258 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88368-88791 bp Zoom in on locus 1 x7 CRISPR array Location: 88368-88791 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 88368-88791 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88368-88791 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLH01000076.1 Clostridioides difficile Y358 gcdY358.contig.75, whole genome shotgun sequence

⇒Summary: seq-len = 35592 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15737-15830 bp Zoom in on locus 1 x2 CRISPR array Location: 15737-15830 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 15737-15830 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15737-15830 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLH01000074.1 Clostridioides difficile Y358 gcdY358.contig.73, whole genome shotgun sequence

⇒Summary: seq-len = 318325 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252473-263316 bp Zoom in on locus 1 x20 CRISPR array Location: 252473-253751 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 252473-253751 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 253935-254201 bp Gene: cd09722:cas1 Type: universal Location: 254204-255184 bp Gene: pfam01930:cas4 Type: Type-I Location: 255187-255705 bp Gene: COG1203:cas3 Type: Type-I Location: 255753-258074 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258085-258786 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258788-259702 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259704-261581 bp Gene: pfam01881:cas6 Type: other Location: 261587-262381 bp Gene: pfam13280:WYL Type: other Location: 262402-263316 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252473-253751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLH01000032.1 Clostridioides difficile Y358 gcdY358.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 162353 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 131674-132554 bp Zoom in on locus 1 x14 CRISPR array Location: 131674-132554 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 131674-132554 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 131674-132554 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLH01000067.1 Clostridioides difficile Y358 gcdY358.contig.66, whole genome shotgun sequence

⇒Summary: seq-len = 110565 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 523-1080 bp Zoom in on locus 1 x9 CRISPR array Location: 523-1080 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 523-1080 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 523-1080 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLH01000037.1 Clostridioides difficile Y358 gcdY358.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 29293 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18259-18814 bp Zoom in on locus 1 x9 CRISPR array Location: 18259-18814 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18259-18814 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18259-18814 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLH01000065.1 Clostridioides difficile Y358 gcdY358.contig.64, whole genome shotgun sequence

⇒Summary: seq-len = 105736 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28323-36669 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28323-30731 bp Gene: cd09693:cas5 Type: Type-I Location: 30758-31555 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31571-32587 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32607-34082 bp Gene: pfam01881:cas6 Type: other Location: 34087-34824 bp Gene: unk Type: unknown Location: 34925-35101 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35560-36669 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLH01000047.1 Clostridioides difficile Y358 gcdY358.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 18506 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1159-1319 bp Zoom in on locus 1 x3 CRISPR array Location: 1159-1319 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1159-1319 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1159-1319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLH01000040.1 Clostridioides difficile Y358 gcdY358.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 57864 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3995-4883 bp Zoom in on locus 1 x14 CRISPR array Location: 3995-4883 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3995-4883 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3995-4883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVLH01000062.1 Clostridioides difficile Y358 gcdY358.contig.61, whole genome shotgun sequence

⇒Summary: seq-len = 9130 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5021-5774 bp Zoom in on locus 1 x12 CRISPR array Location: 5021-5774 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 5021-5774 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5021-5774 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)