CRISPRone

CRISPRone report for GCA_000451545.2_ASM45154v2

♦ Seq 1: AVLI01000037.1 Clostridioides difficile Y381 gcdY381.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 61622 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15275-16482 bp Zoom in on locus 1 x19 CRISPR array Location: 15275-16482 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 15275-16482 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15275-16482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLI01000041.1 Clostridioides difficile Y381 gcdY381.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 3742 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1170-2122 bp Zoom in on locus 1 x15 CRISPR array Location: 1170-2122 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1170-2122 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1170-2122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLI01000029.1 Clostridioides difficile Y381 gcdY381.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 184894 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120719-121146 bp Zoom in on locus 1 x7 CRISPR array Location: 120719-121146 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 120719-121146 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120719-121146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLI01000034.1 Clostridioides difficile Y381 gcdY381.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 82358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23664-25402 bp Zoom in on locus 1 x27 CRISPR array Location: 23664-25402 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 23664-25402 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23664-25402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLI01000044.1 Clostridioides difficile Y381 gcdY381.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 234466 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153822-161687 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 153822-156230 bp Gene: cd09693:cas5 Type: Type-I Location: 156257-157054 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157070-158083 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158103-159578 bp Gene: pfam01881:cas6 Type: other Location: 159583-160320 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 160578-161687 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLI01000032.1 Clostridioides difficile Y381 gcdY381.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 15797 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4775-5267 bp Zoom in on locus 1 x8 CRISPR array Location: 4775-5267 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4775-5267 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4775-5267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLI01000045.1 Clostridioides difficile Y381 gcdY381.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 236696 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 842-1197 bp Zoom in on locus 1 x6 CRISPR array Location: 842-1197 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 842-1197 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 842-1197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLI01000033.1 Clostridioides difficile Y381 gcdY381.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 198111 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79845-82693 bp Zoom in on locus 1 x14 x5 CRISPR array Location: 79845-80749 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 79845-80749 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 82401-82693 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 82401-82693 bp Num of repeats: 5 Spacers: s14-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 79845-80749 bp]: array | spacers
           [Locus range 82401-82693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)