CRISPRone

CRISPRone report for GCA_000451605.1_ASM45160v1

♦ Seq 1: AVLQ01000131.1 Clostridioides difficile P7 gcdP7.contig.136, whole genome shotgun sequence

⇒Summary: seq-len = 19294 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2035-2393 bp Zoom in on locus 1 x6 CRISPR array Location: 2035-2393 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2035-2393 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2035-2393 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLQ01000137.1 Clostridioides difficile P7 gcdP7.contig.142, whole genome shotgun sequence

⇒Summary: seq-len = 49029 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2616-3699 bp Zoom in on locus 1 x17 CRISPR array Location: 2616-3699 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 2616-3699 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2616-3699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLQ01000163.1 Clostridioides difficile P7 gcdP7.contig.168, whole genome shotgun sequence

⇒Summary: seq-len = 50107 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4204-4297 bp Zoom in on locus 1 x2 CRISPR array Location: 4204-4297 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4204-4297 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4204-4297 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLQ01000180.1 Clostridioides difficile P7 gcdP7.contig.185, whole genome shotgun sequence

⇒Summary: seq-len = 36158 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16332-26556 bp Zoom in on locus 1 x11 CRISPR array Location: 16332-17018 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 16332-17018 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 17202-17468 bp Gene: cd09722:cas1 Type: universal Location: 17471-18451 bp Gene: pfam01930:cas4 Type: Type-I Location: 18454-18972 bp Gene: COG1203:cas3 Type: Type-I Location: 19020-21341 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21352-22053 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22055-22969 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 22971-24821 bp Gene: pfam01881:cas6 Type: other Location: 24827-25621 bp Gene: pfam13280:WYL Type: other Location: 25642-26556 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16332-17018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLQ01000152.1 Clostridioides difficile P7 gcdP7.contig.157, whole genome shotgun sequence

⇒Summary: seq-len = 49690 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33748-34502 bp Zoom in on locus 1 x12 CRISPR array Location: 33748-34502 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 33748-34502 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33748-34502 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLQ01000073.1 Clostridioides difficile P7 gcdP7.contig.75, whole genome shotgun sequence

⇒Summary: seq-len = 60635 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59310-59728 bp Zoom in on locus 1 x7 CRISPR array Location: 59310-59728 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 59310-59728 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59310-59728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLQ01000063.1 Clostridioides difficile P7 gcdP7.contig.65, whole genome shotgun sequence

⇒Summary: seq-len = 13631 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10548-10709 bp Zoom in on locus 1 x3 CRISPR array Location: 10548-10709 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 10548-10709 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10548-10709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLQ01000160.1 Clostridioides difficile P7 gcdP7.contig.165, whole genome shotgun sequence

⇒Summary: seq-len = 26122 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19571-26060 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19571-21979 bp Gene: cd09693:cas5 Type: Type-I Location: 22006-22803 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22819-23832 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23852-25318 bp Gene: pfam01881:cas6 Type: other Location: 25323-26060 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLQ01000086.1 Clostridioides difficile P7 gcdP7.contig.88, whole genome shotgun sequence

⇒Summary: seq-len = 38679 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1438-1861 bp Zoom in on locus 1 x7 CRISPR array Location: 1438-1861 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1438-1861 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1438-1861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVLQ01000095.1 Clostridioides difficile P7 gcdP7.contig.97, whole genome shotgun sequence

⇒Summary: seq-len = 28097 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3137-3761 bp Zoom in on locus 1 x10 CRISPR array Location: 3137-3761 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3137-3761 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3137-3761 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVLQ01000105.1 Clostridioides difficile P7 gcdP7.contig.109, whole genome shotgun sequence

⇒Summary: seq-len = 3490 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1929-3334 bp Zoom in on locus 1 x22 CRISPR array Location: 1929-3334 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1929-3334 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1929-3334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)