CRISPRone

CRISPRone report for GCA_000451645.2_ASM45164v2

♦ Seq 1: AVLT01000222.1 Clostridioides difficile P11 gcdP11.contig.227, whole genome shotgun sequence

⇒Summary: seq-len = 27816 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7301-18179 bp Zoom in on locus 1 x21 CRISPR array Location: 7301-8641 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 7301-8641 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 8825-9091 bp Gene: cd09722:cas1 Type: universal Location: 9094-10074 bp Gene: pfam01930:cas4 Type: Type-I Location: 10077-10595 bp Gene: COG1203:cas3 Type: Type-I Location: 10643-12964 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 12975-13676 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13678-14592 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14594-16444 bp Gene: pfam01881:cas6 Type: other Location: 16450-17244 bp Gene: pfam13280:WYL Type: other Location: 17265-18179 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7301-8641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLT01000203.1 Clostridioides difficile P11 gcdP11.contig.208, whole genome shotgun sequence

⇒Summary: seq-len = 57978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3964-4057 bp Zoom in on locus 1 x2 CRISPR array Location: 3964-4057 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3964-4057 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3964-4057 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLT01000102.1 Clostridioides difficile P11 gcdP11.contig.106, whole genome shotgun sequence

⇒Summary: seq-len = 54712 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28158-28712 bp Zoom in on locus 1 x9 CRISPR array Location: 28158-28712 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 28158-28712 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28158-28712 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLT01000090.1 Clostridioides difficile P11 gcdP11.contig.94, whole genome shotgun sequence

⇒Summary: seq-len = 25994 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 637-1960 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 637-998 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 637-998 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1601-1960 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 1601-1960 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 637-998 bp]: array | spacers
           [Locus range 1601-1960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLT01000122.1 Clostridioides difficile P11 gcdP11.contig.126, whole genome shotgun sequence

⇒Summary: seq-len = 28153 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3178-3802 bp Zoom in on locus 1 x10 CRISPR array Location: 3178-3802 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3178-3802 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3178-3802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLT01000201.1 Clostridioides difficile P11 gcdP11.contig.206, whole genome shotgun sequence

⇒Summary: seq-len = 63440 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28277-36142 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28277-30685 bp Gene: cd09693:cas5 Type: Type-I Location: 30712-31509 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31525-32538 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32558-34033 bp Gene: pfam01881:cas6 Type: other Location: 34038-34775 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35033-36142 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLT01000161.1 Clostridioides difficile P11 gcdP11.contig.166, whole genome shotgun sequence

⇒Summary: seq-len = 4251 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2009-2103 bp Zoom in on locus 1 x2 CRISPR array Location: 2009-2103 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2009-2103 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2009-2103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLT01000237.1 Clostridioides difficile P11 gcdP11.contig.242, whole genome shotgun sequence

⇒Summary: seq-len = 14319 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153-5789 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 153-2135 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2146-3216 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3237-4385 bp Gene: pfam01881:cas6 Type: other Location: 4387-5151 bp Gene: cd09693:cas5 Type: Type-I Location: 5142-5789 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLT01000236.1 Clostridioides difficile P11 gcdP11.contig.241, whole genome shotgun sequence

⇒Summary: seq-len = 9734 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8493-9378 bp Zoom in on locus 1 x14 CRISPR array Location: 8493-9378 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 8493-9378 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8493-9378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVLT01000113.1 Clostridioides difficile P11 gcdP11.contig.117, whole genome shotgun sequence

⇒Summary: seq-len = 29531 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22647-23469 bp Zoom in on locus 1 x13 CRISPR array Location: 22647-23469 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 22647-23469 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22647-23469 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVLT01000195.1 Clostridioides difficile P11 gcdP11.contig.200, whole genome shotgun sequence

⇒Summary: seq-len = 64576 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37983-38605 bp Zoom in on locus 1 x10 CRISPR array Location: 37983-38605 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 37983-38605 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37983-38605 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVLT01000133.1 Clostridioides difficile P11 gcdP11.contig.137, whole genome shotgun sequence

⇒Summary: seq-len = 4928 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3740-4753 bp Zoom in on locus 1 x16 CRISPR array Location: 3740-4753 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3740-4753 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3740-4753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)