CRISPRone

CRISPRone report for GCA_000451665.2_ASM45166v2

♦ Seq 1: AVLU01000022.1 Clostridioides difficile P13 gcdP13.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 217449 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61117-61938 bp 2 Locus 2: 207766-207927 bp Zoom in on locus 1 x13 Zoom in on locus 2 x3 CRISPR array Location: 61117-61938 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 61117-61938 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 207766-207927 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 207766-207927 bp Num of repeats: 3 Spacers: s13-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61117-61938 bp]: array | spacers
           [Locus range 207766-207927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLU01000036.1 Clostridioides difficile P13 gcdP13.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 414890 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257475-267699 bp Zoom in on locus 1 x11 CRISPR array Location: 257475-258161 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 257475-258161 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 258345-258611 bp Gene: cd09722:cas1 Type: universal Location: 258614-259594 bp Gene: pfam01930:cas4 Type: Type-I Location: 259597-260115 bp Gene: COG1203:cas3 Type: Type-I Location: 260163-262484 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262495-263196 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 263198-264112 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 264114-265964 bp Gene: pfam01881:cas6 Type: other Location: 265970-266764 bp Gene: pfam13280:WYL Type: other Location: 266785-267699 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257475-258161 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLU01000033.1 Clostridioides difficile P13 gcdP13.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 8598 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4691-5511 bp Zoom in on locus 1 x13 CRISPR array Location: 4691-5511 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4691-5511 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4691-5511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLU01000030.1 Clostridioides difficile P13 gcdP13.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 83241 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1061-1419 bp 2 Locus 2: 47099-48182 bp Zoom in on locus 1 x6 Zoom in on locus 2 x17 CRISPR array Location: 1061-1419 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1061-1419 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 47099-48182 bp Num of repeats: 17 Spacers: s6-s21 CRISPR array Location: 47099-48182 bp Num of repeats: 17 Spacers: s6-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1061-1419 bp]: array | spacers
           [Locus range 47099-48182 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLU01000027.1 Clostridioides difficile P13 gcdP13.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 119330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61053-62393 bp Zoom in on locus 1 x21 CRISPR array Location: 61053-62393 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 61053-62393 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61053-62393 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLU01000024.1 Clostridioides difficile P13 gcdP13.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 29956 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18247-19327 bp Zoom in on locus 1 x17 CRISPR array Location: 18247-19327 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 18247-19327 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18247-19327 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLU01000034.1 Clostridioides difficile P13 gcdP13.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 282857 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 155240-163549 bp 2 Locus 2: 236829-236922 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 155240-157648 bp Gene: cd09693:cas5 Type: Type-I Location: 157675-158472 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 158488-159501 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 159521-160987 bp Gene: pfam01881:cas6 Type: other Location: 160992-161729 bp Gene: unk Type: unknown Location: 161830-162006 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 162440-163549 bp CRISPR array Location: 236829-236922 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 236829-236922 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 236829-236922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)