CRISPRone

CRISPRone report for GCA_000451725.2_ASM45172v2

♦ Seq 1: AVLX01000049.1 Clostridioides difficile P20 gcdP20.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 29463 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10590-11144 bp Zoom in on locus 1 x9 CRISPR array Location: 10590-11144 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10590-11144 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10590-11144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLX01000029.1 Clostridioides difficile P20 gcdP20.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 229858 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139317-140197 bp Zoom in on locus 1 x14 CRISPR array Location: 139317-140197 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 139317-140197 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139317-140197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLX01000035.1 Clostridioides difficile P20 gcdP20.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 61667 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4055-4680 bp Zoom in on locus 1 x10 CRISPR array Location: 4055-4680 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4055-4680 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4055-4680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLX01000039.1 Clostridioides difficile P20 gcdP20.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 59466 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1170-1330 bp Zoom in on locus 1 x3 CRISPR array Location: 1170-1330 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1170-1330 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1170-1330 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLX01000046.1 Clostridioides difficile P20 gcdP20.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 491508 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252240-262951 bp 2 Locus 2: 471524-471617 bp Zoom in on locus 1 x18 Zoom in on locus 2 x2 CRISPR array Location: 252240-253386 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 252240-253386 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 253570-253836 bp Gene: cd09722:cas1 Type: universal Location: 253839-254819 bp Gene: pfam01930:cas4 Type: Type-I Location: 254822-255340 bp Gene: COG1203:cas3 Type: Type-I Location: 255388-257709 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257720-258421 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258423-259337 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259339-261216 bp Gene: pfam01881:cas6 Type: other Location: 261222-262016 bp Gene: pfam13280:WYL Type: other Location: 262037-262951 bp CRISPR array Location: 471524-471617 bp Num of repeats: 2 Spacers: s18-s18 CRISPR array Location: 471524-471617 bp Num of repeats: 2 Spacers: s18-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252240-253386 bp]: array | spacers
           [Locus range 471524-471617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLX01000025.1 Clostridioides difficile P20 gcdP20.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 13946 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1203-7555 bp Zoom in on locus 1 x12 x2 x6 CRISPR array Location: 1203-1957 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1203-1957 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3775-3870 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 3775-3870 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 7200-7555 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 7200-7555 bp Num of repeats: 6 Spacers: s13-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1203-1957 bp]: array | spacers
           [Locus range 3775-3870 bp]: array | spacers
           [Locus range 7200-7555 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLX01000042.1 Clostridioides difficile P20 gcdP20.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 240540 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159094-167440 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 159094-161502 bp Gene: cd09693:cas5 Type: Type-I Location: 161529-162326 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162342-163358 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163378-164853 bp Gene: pfam01881:cas6 Type: other Location: 164858-165595 bp Gene: unk Type: unknown Location: 165696-165872 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166331-167440 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLX01000031.1 Clostridioides difficile P20 gcdP20.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 68865 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4689-5112 bp Zoom in on locus 1 x7 CRISPR array Location: 4689-5112 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4689-5112 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4689-5112 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLX01000024.1 Clostridioides difficile P20 gcdP20.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 2687 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107-664 bp Zoom in on locus 1 x9 CRISPR array Location: 107-664 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 107-664 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107-664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)