CRISPRone

CRISPRone report for GCA_000451745.2_ASM45174v2

♦ Seq 1: AVMD01000041.1 Clostridioides difficile P29 gcdP29.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 459701 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154362-162227 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 154362-156770 bp Gene: cd09693:cas5 Type: Type-I Location: 156797-157594 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157610-158623 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158643-160118 bp Gene: pfam01881:cas6 Type: other Location: 160123-160860 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 161118-162227 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMD01000045.1 Clostridioides difficile P29 gcdP29.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 39828 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36358-36451 bp Zoom in on locus 1 x2 CRISPR array Location: 36358-36451 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 36358-36451 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36358-36451 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMD01000043.1 Clostridioides difficile P29 gcdP29.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 411234 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252986-263038 bp Zoom in on locus 1 x8 CRISPR array Location: 252986-253473 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 252986-253473 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09725:cas2 Type: universal Location: 253657-253923 bp Gene: cd09722:cas1 Type: universal Location: 253926-254906 bp Gene: pfam01930:cas4 Type: Type-I Location: 254909-255427 bp Gene: COG1203:cas3 Type: Type-I Location: 255475-257796 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257807-258508 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258510-259424 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259426-261303 bp Gene: pfam01881:cas6 Type: other Location: 261309-262103 bp Gene: pfam13280:WYL Type: other Location: 262124-263038 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252986-253473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMD01000034.1 Clostridioides difficile P29 gcdP29.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 205346 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 392-7767 bp 2 Locus 2: 146454-148266 bp Zoom in on locus 1 x9 x4 x5 x10 Zoom in on locus 2 x28 CRISPR array Location: 392-948 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 392-948 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3049-3275 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 3049-3275 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 5137-5428 bp Num of repeats: 5 Spacers: s12-s15 CRISPR array Location: 5137-5428 bp Num of repeats: 5 Spacers: s12-s15 CRISPR array Location: 7140-7767 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 7140-7767 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 146454-148266 bp Num of repeats: 28 Spacers: s25-s51 CRISPR array Location: 146454-148266 bp Num of repeats: 28 Spacers: s25-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 392-948 bp]: array | spacers
           [Locus range 3049-3275 bp]: array | spacers
           [Locus range 5137-5428 bp]: array | spacers
           [Locus range 7140-7767 bp]: array | spacers
           [Locus range 146454-148266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMD01000030.1 Clostridioides difficile P29 gcdP29.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 145474 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123089-123317 bp Zoom in on locus 1 x4 CRISPR array Location: 123089-123317 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 123089-123317 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123089-123317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMD01000033.1 Clostridioides difficile P29 gcdP29.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 108529 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17723-18479 bp 2 Locus 2: 108002-108427 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 CRISPR array Location: 17723-18479 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17723-18479 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 108002-108427 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 108002-108427 bp Num of repeats: 7 Spacers: s12-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17723-18479 bp]: array | spacers
           [Locus range 108002-108427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMD01000039.1 Clostridioides difficile P29 gcdP29.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 103916 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 915-1208 bp Zoom in on locus 1 x5 CRISPR array Location: 915-1208 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 915-1208 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 915-1208 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)