CRISPRone

CRISPRone report for GCA_000451785.2_ASM45178v2

♦ Seq 1: AVMF01000032.1 Clostridioides difficile P31 gcdP31.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 407397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112730-113554 bp Zoom in on locus 1 x13 CRISPR array Location: 112730-113554 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112730-113554 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112730-113554 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMF01000034.1 Clostridioides difficile P31 gcdP31.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 463026 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 460964-461921 bp Zoom in on locus 1 x15 CRISPR array Location: 460964-461921 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 460964-461921 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 460964-461921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMF01000033.1 Clostridioides difficile P31 gcdP31.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 99467 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12062-12156 bp 2 Locus 2: 53777-54402 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 12062-12156 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12062-12156 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53777-54402 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53777-54402 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12062-12156 bp]: array | spacers
           [Locus range 53777-54402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMF01000028.1 Clostridioides difficile P31 gcdP31.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 9413 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 729-1416 bp Zoom in on locus 1 x11 CRISPR array Location: 729-1416 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 729-1416 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 729-1416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMF01000031.1 Clostridioides difficile P31 gcdP31.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 41980 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31105-31399 bp Zoom in on locus 1 x5 CRISPR array Location: 31105-31399 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31105-31399 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31105-31399 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMF01000037.1 Clostridioides difficile P31 gcdP31.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 238004 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46347-54222 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 46347-48755 bp Gene: cd09693:cas5 Type: Type-I Location: 48782-49588 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 49604-50617 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 50637-52112 bp Gene: pfam01881:cas6 Type: other Location: 52117-52854 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 53113-54222 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMF01000041.1 Clostridioides difficile P31 gcdP31.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 141869 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113857-125039 bp Zoom in on locus 1 x25 CRISPR array Location: 113857-115474 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113857-115474 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114703-114936 bp Gene: unk Type: unknown Location: 115158-115325 bp Gene: cd09725:cas2 Type: universal Location: 115658-115924 bp Gene: cd09722:cas1 Type: universal Location: 115927-116907 bp Gene: pfam01930:cas4 Type: Type-I Location: 116910-117428 bp Gene: COG1203:cas3 Type: Type-I Location: 117476-119797 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119808-120509 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120511-121425 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121427-123304 bp Gene: pfam01881:cas6 Type: other Location: 123310-124104 bp Gene: pfam13280:WYL Type: other Location: 124125-125039 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113857-115474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVMF01000043.1 Clostridioides difficile P31 gcdP31.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 126008 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69596-76128 bp Zoom in on locus 1 x10 CRISPR array Location: 69596-70218 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69596-70218 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70471-72456 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72467-73537 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73558-74724 bp Gene: pfam01881:cas6 Type: other Location: 74726-75490 bp Gene: cd09693:cas5 Type: Type-I Location: 75481-76128 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69596-70218 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVMF01000029.1 Clostridioides difficile P31 gcdP31.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 166654 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140564-143075 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 140564-140921 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 140564-140921 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 142785-143075 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 142785-143075 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140564-140921 bp]: array | spacers
           [Locus range 142785-143075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)