CRISPRone

CRISPRone report for GCA_000451865.2_ASM45186v2

♦ Seq 1: AVMJ01000030.1 Clostridioides difficile P42 gcdP42.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 435204 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109578-110198 bp 2 Locus 2: 315802-316158 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 CRISPR array Location: 109578-110198 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 109578-110198 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 315802-316158 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 315802-316158 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 109578-110198 bp]: array | spacers
           [Locus range 315802-316158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMJ01000035.1 Clostridioides difficile P42 gcdP42.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 93357 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 887-1112 bp 2 Locus 2: 46783-48192 bp Zoom in on locus 1 x4 Zoom in on locus 2 x22 CRISPR array Location: 887-1112 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 887-1112 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 46783-48192 bp Num of repeats: 22 Spacers: s4-s24 CRISPR array Location: 46783-48192 bp Num of repeats: 22 Spacers: s4-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 887-1112 bp]: array | spacers
           [Locus range 46783-48192 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMJ01000039.1 Clostridioides difficile P42 gcdP42.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 147296 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66193-74058 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 66193-68601 bp Gene: cd09693:cas5 Type: Type-I Location: 68628-69425 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 69441-70454 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 70474-71949 bp Gene: pfam01881:cas6 Type: other Location: 71954-72691 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 72949-74058 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMJ01000032.1 Clostridioides difficile P42 gcdP42.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 2977 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72-1721 bp Zoom in on locus 1 x3 x14 CRISPR array Location: 72-233 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 72-233 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 835-1721 bp Num of repeats: 14 Spacers: s3-s15 CRISPR array Location: 835-1721 bp Num of repeats: 14 Spacers: s3-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72-233 bp]: array | spacers
           [Locus range 835-1721 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMJ01000042.1 Clostridioides difficile P42 gcdP42.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 398664 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256431-267639 bp Zoom in on locus 1 x26 CRISPR array Location: 256431-258101 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 256431-258101 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 258285-258551 bp Gene: cd09722:cas1 Type: universal Location: 258554-259534 bp Gene: pfam01930:cas4 Type: Type-I Location: 259537-260055 bp Gene: COG1203:cas3 Type: Type-I Location: 260103-262424 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262435-263136 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 263138-264052 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 264054-265904 bp Gene: pfam01881:cas6 Type: other Location: 265910-266704 bp Gene: pfam13280:WYL Type: other Location: 266725-267639 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256431-258101 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMJ01000034.1 Clostridioides difficile P42 gcdP42.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 423171 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61001-62740 bp 2 Locus 2: 376726-377084 bp Zoom in on locus 1 x27 Zoom in on locus 2 x6 CRISPR array Location: 61001-62740 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 61001-62740 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 376726-377084 bp Num of repeats: 6 Spacers: s27-s31 CRISPR array Location: 376726-377084 bp Num of repeats: 6 Spacers: s27-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61001-62740 bp]: array | spacers
           [Locus range 376726-377084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMJ01000037.1 Clostridioides difficile P42 gcdP42.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 8998 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4715-5796 bp Zoom in on locus 1 x17 CRISPR array Location: 4715-5796 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 4715-5796 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4715-5796 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVMJ01000040.1 Clostridioides difficile P42 gcdP42.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 29349 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10527-11084 bp Zoom in on locus 1 x9 CRISPR array Location: 10527-11084 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10527-11084 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10527-11084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVMJ01000044.1 Clostridioides difficile P42 gcdP42.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 112990 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59758-67040 bp Zoom in on locus 1 x17 CRISPR array Location: 59758-60837 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 59758-60837 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 61404-63386 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 63397-64467 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 64488-65636 bp Gene: pfam01881:cas6 Type: other Location: 65638-66402 bp Gene: cd09693:cas5 Type: Type-I Location: 66393-67040 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 59758-60837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)