CRISPRone

CRISPRone report for GCA_000451885.2_ASM45188v2

♦ Seq 1: AVMK01000031.1 Clostridioides difficile P45 gcdP45.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 355970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61718-62542 bp Zoom in on locus 1 x13 CRISPR array Location: 61718-62542 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 61718-62542 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61718-62542 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMK01000028.1 Clostridioides difficile P45 gcdP45.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 108091 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82144-84655 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 82144-82501 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 82144-82501 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 84365-84655 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 84365-84655 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 82144-82501 bp]: array | spacers
           [Locus range 84365-84655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMK01000035.1 Clostridioides difficile P45 gcdP45.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 237935 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46321-54196 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 46321-48729 bp Gene: cd09693:cas5 Type: Type-I Location: 48756-49562 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 49578-50591 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 50611-52086 bp Gene: pfam01881:cas6 Type: other Location: 52091-52828 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 53087-54196 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMK01000041.1 Clostridioides difficile P45 gcdP45.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 126063 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69573-76105 bp Zoom in on locus 1 x10 CRISPR array Location: 69573-70195 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69573-70195 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70448-72433 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72444-73514 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73535-74701 bp Gene: pfam01881:cas6 Type: other Location: 74703-75467 bp Gene: cd09693:cas5 Type: Type-I Location: 75458-76105 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69573-70195 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMK01000026.1 Clostridioides difficile P45 gcdP45.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 67669 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 584-1271 bp Zoom in on locus 1 x11 CRISPR array Location: 584-1271 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 584-1271 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 584-1271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMK01000032.1 Clostridioides difficile P45 gcdP45.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 99803 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12264-12358 bp 2 Locus 2: 53979-54604 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 12264-12358 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12264-12358 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53979-54604 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53979-54604 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12264-12358 bp]: array | spacers
           [Locus range 53979-54604 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMK01000027.1 Clostridioides difficile P45 gcdP45.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 54206 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31057-31351 bp Zoom in on locus 1 x5 CRISPR array Location: 31057-31351 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 31057-31351 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31057-31351 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVMK01000039.1 Clostridioides difficile P45 gcdP45.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 141850 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113746-125060 bp Zoom in on locus 1 x27 CRISPR array Location: 113746-115495 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 113746-115495 bp Num of repeats: 27 Spacers: s1-s26 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114592-114825 bp Gene: unk Type: unknown Location: 115047-115346 bp Gene: cd09725:cas2 Type: universal Location: 115679-115945 bp Gene: cd09722:cas1 Type: universal Location: 115948-116928 bp Gene: pfam01930:cas4 Type: Type-I Location: 116931-117449 bp Gene: COG1203:cas3 Type: Type-I Location: 117497-119818 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119829-120530 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120532-121446 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121448-123325 bp Gene: pfam01881:cas6 Type: other Location: 123331-124125 bp Gene: pfam13280:WYL Type: other Location: 124146-125060 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113746-115495 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVMK01000025.1 Clostridioides difficile P45 gcdP45.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 210306 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1137-2095 bp Zoom in on locus 1 x15 CRISPR array Location: 1137-2095 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1137-2095 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1137-2095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)