CRISPRone

CRISPRone report for GCA_000451965.2_ASM45196v2

♦ Seq 1: AVMO01000015.1 Clostridioides difficile P50 gcdP50.contig.14, whole genome shotgun sequence

⇒Summary: seq-len = 22997 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4105-10418 bp Zoom in on locus 1 x9 x12 x4 x3 CRISPR array Location: 4105-4660 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4105-4660 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7465-8218 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 7465-8218 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 9886-10113 bp Num of repeats: 4 Spacers: s20-s22 CRISPR array Location: 9886-10113 bp Num of repeats: 4 Spacers: s20-s22 CRISPR array Location: 10257-10418 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 10257-10418 bp Num of repeats: 3 Spacers: s23-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4105-4660 bp]: array | spacers
           [Locus range 7465-8218 bp]: array | spacers
           [Locus range 9886-10113 bp]: array | spacers
           [Locus range 10257-10418 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMO01000027.1 Clostridioides difficile P50 gcdP50.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 672161 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111109-121775 bp Zoom in on locus 1 x18 CRISPR array Location: 111109-112237 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 111109-112237 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 112421-112687 bp Gene: cd09722:cas1 Type: universal Location: 112690-113670 bp Gene: pfam01930:cas4 Type: Type-I Location: 113673-114191 bp Gene: cd09641:cas3HD Type: Type-I Location: 114239-116560 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 116571-117272 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 117274-118188 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 118190-120040 bp Gene: pfam01881:cas6 Type: other Location: 120046-120840 bp Gene: pfam13280:WYL Type: other Location: 120861-121775 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 111109-112237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMO01000020.1 Clostridioides difficile P50 gcdP50.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 599721 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30324-32463 bp 2 Locus 2: 356240-356598 bp 3 Locus 3: 518402-526258 bp Zoom in on locus 1 x33 Zoom in on locus 2 x6 Zoom in on locus 3 CRISPR array Location: 30324-32463 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 30324-32463 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 356240-356598 bp Num of repeats: 6 Spacers: s33-s37 CRISPR array Location: 356240-356598 bp Num of repeats: 6 Spacers: s33-s37 Gene: cd09641:cas3HD Type: Type-I Location: 518402-520810 bp Gene: cd09693:cas5 Type: Type-I Location: 520837-521634 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 521650-522663 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 522683-524149 bp Gene: pfam01881:cas6 Type: other Location: 524154-524891 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 525149-526258 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30324-32463 bp]: array | spacers
           [Locus range 356240-356598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMO01000014.1 Clostridioides difficile P50 gcdP50.contig.13, whole genome shotgun sequence

⇒Summary: seq-len = 19808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7458-7553 bp Zoom in on locus 1 x2 CRISPR array Location: 7458-7553 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7458-7553 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7458-7553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMO01000019.1 Clostridioides difficile P50 gcdP50.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 486408 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132633-133780 bp 2 Locus 2: 443247-443470 bp Zoom in on locus 1 x18 Zoom in on locus 2 x4 CRISPR array Location: 132633-133780 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 132633-133780 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 443247-443470 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 443247-443470 bp Num of repeats: 4 Spacers: s18-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132633-133780 bp]: array | spacers
           [Locus range 443247-443470 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMO01000018.1 Clostridioides difficile P50 gcdP50.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 600884 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196150-197032 bp 2 Locus 2: 403497-403984 bp 3 Locus 3: 512384-512678 bp Zoom in on locus 1 x14 Zoom in on locus 2 x8 Zoom in on locus 3 x5 CRISPR array Location: 196150-197032 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 196150-197032 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 403497-403984 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 403497-403984 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 512384-512678 bp Num of repeats: 5 Spacers: s21-s24 CRISPR array Location: 512384-512678 bp Num of repeats: 5 Spacers: s21-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196150-197032 bp]: array | spacers
           [Locus range 403497-403984 bp]: array | spacers
           [Locus range 512384-512678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)