CRISPRone

CRISPRone report for GCA_000451985.1_ASM45198v1

♦ Seq 1: AVMP01000027.1 Clostridioides difficile P51 gcdP51.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 75803 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1158-1318 bp Zoom in on locus 1 x3 CRISPR array Location: 1158-1318 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1158-1318 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1158-1318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMP01000018.1 Clostridioides difficile P51 gcdP51.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 186425 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118748-119303 bp Zoom in on locus 1 x9 CRISPR array Location: 118748-119303 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 118748-119303 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118748-119303 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMP01000023.1 Clostridioides difficile P51 gcdP51.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 61744 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3976-4731 bp Zoom in on locus 1 x12 CRISPR array Location: 3976-4731 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3976-4731 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3976-4731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMP01000020.1 Clostridioides difficile P51 gcdP51.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 29283 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18230-18656 bp Zoom in on locus 1 x7 CRISPR array Location: 18230-18656 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 18230-18656 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18230-18656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMP01000038.1 Clostridioides difficile P51 gcdP51.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 161476 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26925-37876 bp Zoom in on locus 1 x21 CRISPR array Location: 26925-28260 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 26925-28260 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 28444-28710 bp Gene: cd09722:cas1 Type: universal Location: 28713-29693 bp Gene: pfam01930:cas4 Type: Type-I Location: 29696-30214 bp Gene: COG1203:cas3 Type: Type-I Location: 30262-32583 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 32594-33295 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 33297-34211 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 34213-36090 bp Gene: pfam01881:cas6 Type: other Location: 36096-36890 bp Gene: pfam13280:WYL Type: other Location: 36911-37876 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26925-28260 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMP01000021.1 Clostridioides difficile P51 gcdP51.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 91825 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79655-82570 bp Zoom in on locus 1 x15 x5 CRISPR array Location: 79655-80626 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 79655-80626 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 82278-82570 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 82278-82570 bp Num of repeats: 5 Spacers: s15-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 79655-80626 bp]: array | spacers
           [Locus range 82278-82570 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMP01000017.1 Clostridioides difficile P51 gcdP51.contig.16, whole genome shotgun sequence

⇒Summary: seq-len = 275335 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185599-185758 bp Zoom in on locus 1 x3 CRISPR array Location: 185599-185758 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 185599-185758 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185599-185758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVMP01000031.1 Clostridioides difficile P51 gcdP51.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 280792 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196427-204748 bp 2 Locus 2: 278022-278778 bp Zoom in on locus 1 Zoom in on locus 2 x12 Gene: cd09641:cas3HD Type: Type-I Location: 196427-198835 bp Gene: cd09693:cas5 Type: Type-I Location: 198862-199659 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 199675-200691 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 200711-202186 bp Gene: pfam01881:cas6 Type: other Location: 202191-202928 bp Gene: unk Type: unknown Location: 203029-203205 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 203639-204748 bp CRISPR array Location: 278022-278778 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 278022-278778 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 278022-278778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVMP01000040.1 Clostridioides difficile P51 gcdP51.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 136700 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60116-60209 bp Zoom in on locus 1 x2 CRISPR array Location: 60116-60209 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 60116-60209 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60116-60209 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVMP01000029.1 Clostridioides difficile P51 gcdP51.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 259009 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255181-255666 bp Zoom in on locus 1 x8 CRISPR array Location: 255181-255666 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 255181-255666 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 255181-255666 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)