CRISPRone

CRISPRone report for GCA_000452005.1_ASM45200v1

♦ Seq 1: AVMQ01000050.1 Clostridioides difficile P59 gcdP59.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 123083 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66821-73841 bp Zoom in on locus 1 x13 CRISPR array Location: 66821-67639 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 66821-67639 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG1203:cas3 Type: Type-I Location: 68205-70187 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 70198-71268 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 71289-72437 bp Gene: pfam01881:cas6 Type: other Location: 72439-73203 bp Gene: cd09693:cas5 Type: Type-I Location: 73194-73841 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 66821-67639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMQ01000049.1 Clostridioides difficile P59 gcdP59.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 212835 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39071-50907 bp Zoom in on locus 1 x35 CRISPR array Location: 39071-41342 bp Num of repeats: 35 Spacers: s1-s34 CRISPR array Location: 39071-41342 bp Num of repeats: 35 Spacers: s1-s34 Gene: cd09725:cas2 Type: universal Location: 41526-41792 bp Gene: cd09722:cas1 Type: universal Location: 41795-42775 bp Gene: pfam01930:cas4 Type: Type-I Location: 42778-43296 bp Gene: COG1203:cas3 Type: Type-I Location: 43344-45665 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 45676-46377 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 46379-47293 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 47295-49172 bp Gene: pfam01881:cas6 Type: other Location: 49178-49972 bp Gene: pfam13280:WYL Type: other Location: 49993-50907 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 39071-41342 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMQ01000043.1 Clostridioides difficile P59 gcdP59.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 170033 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32599-40474 bp 2 Locus 2: 114636-114795 bp Zoom in on locus 1 Zoom in on locus 2 x3 Gene: cd09641:cas3HD Type: Type-I Location: 32599-35007 bp Gene: cd09693:cas5 Type: Type-I Location: 35034-35840 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 35856-36869 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 36889-38364 bp Gene: pfam01881:cas6 Type: other Location: 38369-39106 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 39365-40474 bp CRISPR array Location: 114636-114795 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 114636-114795 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114636-114795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMQ01000029.1 Clostridioides difficile P59 gcdP59.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 54082 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42778-43603 bp Zoom in on locus 1 x13 CRISPR array Location: 42778-43603 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 42778-43603 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42778-43603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMQ01000036.1 Clostridioides difficile P59 gcdP59.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 44724 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21062-22147 bp Zoom in on locus 1 x17 CRISPR array Location: 21062-22147 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 21062-22147 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21062-22147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMQ01000038.1 Clostridioides difficile P59 gcdP59.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 268380 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 210769-211060 bp Zoom in on locus 1 x5 CRISPR array Location: 210769-211060 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 210769-211060 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 210769-211060 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMQ01000023.1 Clostridioides difficile P59 gcdP59.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 3425 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 598-1351 bp Zoom in on locus 1 x12 CRISPR array Location: 598-1351 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 598-1351 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 598-1351 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVMQ01000032.1 Clostridioides difficile P59 gcdP59.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 204876 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53896-55039 bp Zoom in on locus 1 x18 CRISPR array Location: 53896-55039 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 53896-55039 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53896-55039 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVMQ01000028.1 Clostridioides difficile P59 gcdP59.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 413328 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138085-138835 bp 2 Locus 2: 347118-347213 bp Zoom in on locus 1 x12 Zoom in on locus 2 x2 CRISPR array Location: 138085-138835 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 138085-138835 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 347118-347213 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 347118-347213 bp Num of repeats: 2 Spacers: s12-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138085-138835 bp]: array | spacers
           [Locus range 347118-347213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)