CRISPRone

CRISPRone report for GCA_000452025.2_ASM45202v2

♦ Seq 1: AVMR01000038.1 Clostridioides difficile P61 gcdP61.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 256247 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252019-252906 bp Zoom in on locus 1 x14 CRISPR array Location: 252019-252906 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 252019-252906 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252019-252906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMR01000037.1 Clostridioides difficile P61 gcdP61.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 61226 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15265-16538 bp Zoom in on locus 1 x20 CRISPR array Location: 15265-16538 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 15265-16538 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15265-16538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMR01000040.1 Clostridioides difficile P61 gcdP61.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 470719 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153397-161262 bp 2 Locus 2: 234529-234884 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 153397-155805 bp Gene: cd09693:cas5 Type: Type-I Location: 155832-156629 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 156645-157658 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 157678-159153 bp Gene: pfam01881:cas6 Type: other Location: 159158-159895 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 160153-161262 bp CRISPR array Location: 234529-234884 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 234529-234884 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 234529-234884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMR01000031.1 Clostridioides difficile P61 gcdP61.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 29157 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18190-18682 bp Zoom in on locus 1 x8 CRISPR array Location: 18190-18682 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18190-18682 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18190-18682 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMR01000030.1 Clostridioides difficile P61 gcdP61.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 264131 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120703-121130 bp Zoom in on locus 1 x7 CRISPR array Location: 120703-121130 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 120703-121130 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120703-121130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMR01000034.1 Clostridioides difficile P61 gcdP61.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 82040 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23387-25125 bp Zoom in on locus 1 x27 CRISPR array Location: 23387-25125 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 23387-25125 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23387-25125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMR01000032.1 Clostridioides difficile P61 gcdP61.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 124615 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 723-2698 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 723-1278 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 723-1278 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1880-2698 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 1880-2698 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 723-1278 bp]: array | spacers
           [Locus range 1880-2698 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)