CRISPRone

CRISPRone report for GCA_000452105.2_ASM45210v2

♦ Seq 1: AVMV01000031.1 Clostridioides difficile P72 gcdP72.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 286326 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159952-168273 bp 2 Locus 2: 241556-241913 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 159952-162360 bp Gene: cd09693:cas5 Type: Type-I Location: 162387-163184 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163200-164216 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164236-165711 bp Gene: pfam01881:cas6 Type: other Location: 165716-166453 bp Gene: unk Type: unknown Location: 166554-166730 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 167164-168273 bp CRISPR array Location: 241556-241913 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 241556-241913 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241556-241913 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMV01000033.1 Clostridioides difficile P72 gcdP72.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 524807 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252911-263852 bp 2 Locus 2: 485844-485937 bp Zoom in on locus 1 x22 Zoom in on locus 2 x2 CRISPR array Location: 252911-254314 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 252911-254314 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 254498-254764 bp Gene: cd09722:cas1 Type: universal Location: 254767-255747 bp Gene: pfam01930:cas4 Type: Type-I Location: 255750-256268 bp Gene: COG1203:cas3 Type: Type-I Location: 256316-258637 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258648-259349 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259351-260265 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260267-262117 bp Gene: pfam01881:cas6 Type: other Location: 262123-262917 bp Gene: pfam13280:WYL Type: other Location: 262938-263852 bp CRISPR array Location: 485844-485937 bp Num of repeats: 2 Spacers: s22-s22 CRISPR array Location: 485844-485937 bp Num of repeats: 2 Spacers: s22-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252911-254314 bp]: array | spacers
           [Locus range 485844-485937 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMV01000023.1 Clostridioides difficile P72 gcdP72.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 69184 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4043-5061 bp Zoom in on locus 1 x16 CRISPR array Location: 4043-5061 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4043-5061 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4043-5061 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMV01000019.1 Clostridioides difficile P72 gcdP72.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 29725 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18297-19054 bp Zoom in on locus 1 x12 CRISPR array Location: 18297-19054 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18297-19054 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18297-19054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMV01000027.1 Clostridioides difficile P72 gcdP72.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 93845 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1500-1660 bp Zoom in on locus 1 x3 CRISPR array Location: 1500-1660 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1500-1660 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1500-1660 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMV01000018.1 Clostridioides difficile P72 gcdP72.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 215959 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124168-124597 bp Zoom in on locus 1 x7 CRISPR array Location: 124168-124597 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 124168-124597 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124168-124597 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMV01000030.1 Clostridioides difficile P72 gcdP72.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 85059 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81035-81651 bp Zoom in on locus 1 x10 CRISPR array Location: 81035-81651 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 81035-81651 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81035-81651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)