CRISPRone

CRISPRone report for GCA_000452125.2_ASM45212v2

♦ Seq 1: AVMW01000030.1 Clostridioides difficile P71 gcdP71.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 417600 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29071-29232 bp 2 Locus 2: 252663-253083 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 CRISPR array Location: 29071-29232 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29071-29232 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 252663-253083 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 252663-253083 bp Num of repeats: 7 Spacers: s3-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29071-29232 bp]: array | spacers
           [Locus range 252663-253083 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMW01000028.1 Clostridioides difficile P71 gcdP71.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 372520 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189745-189840 bp Zoom in on locus 1 x2 CRISPR array Location: 189745-189840 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 189745-189840 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189745-189840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMW01000040.1 Clostridioides difficile P71 gcdP71.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 330600 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79881-90839 bp 2 Locus 2: 142049-151772 bp 3 Locus 3: 231559-231915 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x6 Gene: cd06127:DEDDh Type: Type-I Location: 79881-80387 bp Gene: unk Type: unknown Location: 80546-81214 bp Gene: unk Type: unknown Location: 81627-82133 bp Gene: cd06127:DEDDh Type: Type-I Location: 82505-83542 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 90354-90839 bp Gene: cd09641:cas3HD Type: Type-I Location: 142049-144457 bp Gene: cd09693:cas5 Type: Type-I Location: 144484-145281 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 145297-146310 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 146330-147796 bp Gene: pfam01881:cas6 Type: other Location: 147801-148538 bp Gene: unk Type: unknown Location: 148852-149310 bp Gene: cas14:cas14 Type: Type-V Location: 149338-150510 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 150663-151772 bp CRISPR array Location: 231559-231915 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 231559-231915 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 231559-231915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMW01000029.1 Clostridioides difficile P71 gcdP71.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 56283 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45443-46063 bp Zoom in on locus 1 x10 CRISPR array Location: 45443-46063 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45443-46063 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45443-46063 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)