CRISPRone

CRISPRone report for GCA_000452145.1_ASM45214v1

♦ Seq 1: AVMX01000042.1 Clostridioides difficile P73 gcdP73.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 101517 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6279-6637 bp Zoom in on locus 1 x6 CRISPR array Location: 6279-6637 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6279-6637 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6279-6637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMX01000033.1 Clostridioides difficile P73 gcdP73.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 8599 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4715-5469 bp Zoom in on locus 1 x12 CRISPR array Location: 4715-5469 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4715-5469 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4715-5469 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMX01000030.1 Clostridioides difficile P73 gcdP73.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 68678 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22644-23727 bp Zoom in on locus 1 x17 CRISPR array Location: 22644-23727 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 22644-23727 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22644-23727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMX01000035.1 Clostridioides difficile P73 gcdP73.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 46642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 571-664 bp Zoom in on locus 1 x2 CRISPR array Location: 571-664 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 571-664 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 571-664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMX01000024.1 Clostridioides difficile P73 gcdP73.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 98151 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18243-18867 bp Zoom in on locus 1 x10 CRISPR array Location: 18243-18867 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18243-18867 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18243-18867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVMX01000032.1 Clostridioides difficile P73 gcdP73.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 1091 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 349-509 bp Zoom in on locus 1 x3 CRISPR array Location: 349-509 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 349-509 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 349-509 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVMX01000021.1 Clostridioides difficile P73 gcdP73.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 18046 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1869-2287 bp Zoom in on locus 1 x7 CRISPR array Location: 1869-2287 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1869-2287 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1869-2287 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVMX01000023.1 Clostridioides difficile P73 gcdP73.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 193582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129247-129670 bp Zoom in on locus 1 x7 CRISPR array Location: 129247-129670 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 129247-129670 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129247-129670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVMX01000026.1 Clostridioides difficile P73 gcdP73.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 170235 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111932-113337 bp Zoom in on locus 1 x22 CRISPR array Location: 111932-113337 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 111932-113337 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111932-113337 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVMX01000037.1 Clostridioides difficile P73 gcdP73.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 532598 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252753-262977 bp Zoom in on locus 1 x11 CRISPR array Location: 252753-253439 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252753-253439 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253623-253889 bp Gene: cd09722:cas1 Type: universal Location: 253892-254872 bp Gene: pfam01930:cas4 Type: Type-I Location: 254875-255393 bp Gene: COG1203:cas3 Type: Type-I Location: 255441-257762 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257773-258474 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258476-259390 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259392-261242 bp Gene: pfam01881:cas6 Type: other Location: 261248-262042 bp Gene: pfam13280:WYL Type: other Location: 262063-262977 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252753-253439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVMX01000034.1 Clostridioides difficile P73 gcdP73.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 236486 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154979-163288 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 154979-157387 bp Gene: cd09693:cas5 Type: Type-I Location: 157414-158211 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 158227-159240 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 159260-160726 bp Gene: pfam01881:cas6 Type: other Location: 160731-161468 bp Gene: unk Type: unknown Location: 161569-161745 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 162179-163288 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)