CRISPRone

CRISPRone report for GCA_000452165.2_ASM45216v2

♦ Seq 1: AVMY01000020.1 Clostridioides difficile P74 gcdP74.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 92889 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29061-29222 bp Zoom in on locus 1 x3 CRISPR array Location: 29061-29222 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29061-29222 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29061-29222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMY01000026.1 Clostridioides difficile P74 gcdP74.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 303810 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95377-106335 bp 2 Locus 2: 157545-167268 bp 3 Locus 3: 247055-247280 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95377-95883 bp Gene: unk Type: unknown Location: 96042-96710 bp Gene: unk Type: unknown Location: 97123-97629 bp Gene: cd06127:DEDDh Type: Type-I Location: 98001-99038 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105850-106335 bp Gene: cd09641:cas3HD Type: Type-I Location: 157545-159953 bp Gene: cd09693:cas5 Type: Type-I Location: 159980-160777 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160793-161806 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161826-163292 bp Gene: pfam01881:cas6 Type: other Location: 163297-164034 bp Gene: unk Type: unknown Location: 164348-164806 bp Gene: cas14:cas14 Type: Type-V Location: 164834-166006 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166159-167268 bp CRISPR array Location: 247055-247280 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247055-247280 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247055-247280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMY01000022.1 Clostridioides difficile P74 gcdP74.contig.21, whole genome shotgun sequence

⇒Summary: seq-len = 281848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116922-117342 bp Zoom in on locus 1 x7 CRISPR array Location: 116922-117342 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 116922-117342 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 116922-117342 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMY01000019.1 Clostridioides difficile P74 gcdP74.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 373458 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190682-190777 bp Zoom in on locus 1 x2 CRISPR array Location: 190682-190777 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 190682-190777 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190682-190777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVMY01000021.1 Clostridioides difficile P74 gcdP74.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 155821 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45440-46060 bp 2 Locus 2: 136909-139964 bp Zoom in on locus 1 x10 Zoom in on locus 2 x4 x3 CRISPR array Location: 45440-46060 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 45440-46060 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 136909-137136 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 136909-137136 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 139803-139964 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 139803-139964 bp Num of repeats: 3 Spacers: s13-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45440-46060 bp]: array | spacers
           [Locus range 136909-137136 bp]: array | spacers
           [Locus range 139803-139964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)