CRISPRone

CRISPRone report for GCA_000452325.2_ASM45232v2

♦ Seq 1: AVNG01000013.1 Clostridioides difficile F548 gcdF548.contig.12, whole genome shotgun sequence

⇒Summary: seq-len = 41235 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8324-10299 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 8324-8879 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8324-8879 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 9481-10299 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 9481-10299 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8324-8879 bp]: array | spacers
           [Locus range 9481-10299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVNG01000014.1 Clostridioides difficile F548 gcdF548.contig.13, whole genome shotgun sequence

⇒Summary: seq-len = 756648 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 499363-499456 bp Zoom in on locus 1 x2 CRISPR array Location: 499363-499456 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 499363-499456 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 499363-499456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVNG01000009.1 Clostridioides difficile F548 gcdF548.contig.8, whole genome shotgun sequence

⇒Summary: seq-len = 1298909 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118865-120605 bp 2 Locus 2: 467946-468171 bp 3 Locus 3: 809507-809733 bp 4 Locus 4: 975490-983355 bp 5 Locus 5: 1057576-1058132 bp Zoom in on locus 1 x27 Zoom in on locus 2 x4 Zoom in on locus 3 x4 Zoom in on locus 4 Zoom in on locus 5 x9 CRISPR array Location: 118865-120605 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 118865-120605 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 467946-468171 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 467946-468171 bp Num of repeats: 4 Spacers: s27-s29 CRISPR array Location: 809507-809733 bp Num of repeats: 4 Spacers: s30-s32 CRISPR array Location: 809507-809733 bp Num of repeats: 4 Spacers: s30-s32 Gene: cd09641:cas3HD Type: Type-I Location: 975490-977898 bp Gene: cd09693:cas5 Type: Type-I Location: 977925-978722 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 978738-979751 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 979771-981246 bp Gene: pfam01881:cas6 Type: other Location: 981251-981988 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 982246-983355 bp CRISPR array Location: 1057576-1058132 bp Num of repeats: 9 Spacers: s33-s40 CRISPR array Location: 1057576-1058132 bp Num of repeats: 9 Spacers: s33-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 118865-120605 bp]: array | spacers
           [Locus range 467946-468171 bp]: array | spacers
           [Locus range 809507-809733 bp]: array | spacers
           [Locus range 1057576-1058132 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVNG01000008.1 Clostridioides difficile F548 gcdF548.contig.7, whole genome shotgun sequence

⇒Summary: seq-len = 561897 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143587-144014 bp 2 Locus 2: 347548-347904 bp 3 Locus 3: 464253-465012 bp Zoom in on locus 1 x7 Zoom in on locus 2 x6 Zoom in on locus 3 x12 CRISPR array Location: 143587-144014 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 143587-144014 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 347548-347904 bp Num of repeats: 6 Spacers: s7-s11 CRISPR array Location: 347548-347904 bp Num of repeats: 6 Spacers: s7-s11 CRISPR array Location: 464253-465012 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 464253-465012 bp Num of repeats: 12 Spacers: s12-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143587-144014 bp]: array | spacers
           [Locus range 347548-347904 bp]: array | spacers
           [Locus range 464253-465012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)