CRISPRone

CRISPRone report for GCA_000452345.2_ASM45234v2

♦ Seq 1: AVNH01000022.1 Clostridioides difficile F601 gcdF601.contig.21, whole genome shotgun sequence

⇒Summary: seq-len = 98570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1002-1163 bp Zoom in on locus 1 x3 CRISPR array Location: 1002-1163 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1002-1163 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1002-1163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVNH01000026.1 Clostridioides difficile F601 gcdF601.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 47164 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102-1058 bp Zoom in on locus 1 x15 CRISPR array Location: 102-1058 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 102-1058 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102-1058 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVNH01000012.1 Clostridioides difficile F601 gcdF601.contig.11, whole genome shotgun sequence

⇒Summary: seq-len = 130188 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122795-130090 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 122795-124408 bp Gene: COG2378:WYL Type: other Location: 124683-126668 bp Gene: unk Type: unknown Location: 126673-126870 bp Gene: unk Type: unknown Location: 127565-127810 bp Gene: pfam00078:RT Type: other Location: 128249-130090 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVNH01000025.1 Clostridioides difficile F601 gcdF601.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 239663 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158287-166624 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 158287-160695 bp Gene: cd09693:cas5 Type: Type-I Location: 160722-161528 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 161544-162557 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 162576-164042 bp Gene: pfam01881:cas6 Type: other Location: 164047-164784 bp Gene: unk Type: unknown Location: 164885-165061 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165515-166624 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVNH01000029.1 Clostridioides difficile F601 gcdF601.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 299825 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125055-136332 bp Zoom in on locus 1 x27 CRISPR array Location: 125055-126794 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 125055-126794 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 126978-127244 bp Gene: cd09722:cas1 Type: universal Location: 127247-128227 bp Gene: pfam01930:cas4 Type: Type-I Location: 128230-128748 bp Gene: COG1203:cas3 Type: Type-I Location: 128796-131117 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 131128-131829 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 131831-132745 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 132747-134597 bp Gene: pfam01881:cas6 Type: other Location: 134603-135397 bp Gene: pfam13280:WYL Type: other Location: 135418-136332 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125055-126794 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVNH01000016.1 Clostridioides difficile F601 gcdF601.contig.15, whole genome shotgun sequence

⇒Summary: seq-len = 184818 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124908-126122 bp Zoom in on locus 1 x19 CRISPR array Location: 124908-126122 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 124908-126122 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124908-126122 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVNH01000019.1 Clostridioides difficile F601 gcdF601.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 404838 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3465-3959 bp 2 Locus 2: 94613-95037 bp 3 Locus 3: 232458-233346 bp Zoom in on locus 1 x8 Zoom in on locus 2 x7 Zoom in on locus 3 x14 CRISPR array Location: 3465-3959 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3465-3959 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 94613-95037 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 94613-95037 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 232458-233346 bp Num of repeats: 14 Spacers: s14-s26 CRISPR array Location: 232458-233346 bp Num of repeats: 14 Spacers: s14-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3465-3959 bp]: array | spacers
           [Locus range 94613-95037 bp]: array | spacers
           [Locus range 232458-233346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVNH01000023.1 Clostridioides difficile F601 gcdF601.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 261433 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257206-257961 bp Zoom in on locus 1 x12 CRISPR array Location: 257206-257961 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 257206-257961 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 257206-257961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)