CRISPRone

CRISPRone report for GCA_000452425.2_ASM45242v2

♦ Seq 1: AVHH01000058.1 Clostridioides difficile CD88 gcdCD88.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 17255 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6150-6641 bp Zoom in on locus 1 x8 CRISPR array Location: 6150-6641 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 6150-6641 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6150-6641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHH01000104.1 Clostridioides difficile CD88 gcdCD88.contig.104, whole genome shotgun sequence

⇒Summary: seq-len = 67774 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60770-67270 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 60770-63178 bp Gene: unk Type: unknown Location: 63205-63507 bp Gene: cd09693:cas5 Type: Type-I Location: 63666-64001 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 64017-65033 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 65053-66528 bp Gene: pfam01881:cas6 Type: other Location: 66533-67270 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHH01000055.1 Clostridioides difficile CD88 gcdCD88.contig.55, whole genome shotgun sequence

⇒Summary: seq-len = 184362 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124431-124924 bp Zoom in on locus 1 x8 CRISPR array Location: 124431-124924 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 124431-124924 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124431-124924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHH01000118.1 Clostridioides difficile CD88 gcdCD88.contig.118, whole genome shotgun sequence

⇒Summary: seq-len = 28972 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8676-8769 bp Zoom in on locus 1 x2 CRISPR array Location: 8676-8769 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8676-8769 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8676-8769 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHH01000100.1 Clostridioides difficile CD88 gcdCD88.contig.100, whole genome shotgun sequence

⇒Summary: seq-len = 37623 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33701-34317 bp Zoom in on locus 1 x10 CRISPR array Location: 33701-34317 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 33701-34317 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33701-34317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHH01000114.1 Clostridioides difficile CD88 gcdCD88.contig.114, whole genome shotgun sequence

⇒Summary: seq-len = 19940 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1563-1854 bp Zoom in on locus 1 x5 CRISPR array Location: 1563-1854 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1563-1854 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1563-1854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHH01000052.1 Clostridioides difficile CD88 gcdCD88.contig.51, whole genome shotgun sequence

⇒Summary: seq-len = 162536 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 582-743 bp 2 Locus 2: 155079-156228 bp Zoom in on locus 1 x3 Zoom in on locus 2 x18 CRISPR array Location: 582-743 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 582-743 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 155079-156228 bp Num of repeats: 18 Spacers: s3-s19 CRISPR array Location: 155079-156228 bp Num of repeats: 18 Spacers: s3-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 582-743 bp]: array | spacers
           [Locus range 155079-156228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHH01000115.1 Clostridioides difficile CD88 gcdCD88.contig.115, whole genome shotgun sequence

⇒Summary: seq-len = 130372 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64154-75291 bp Zoom in on locus 1 x25 CRISPR array Location: 64154-65753 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 64154-65753 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 65937-66203 bp Gene: cd09722:cas1 Type: universal Location: 66206-67186 bp Gene: pfam01930:cas4 Type: Type-I Location: 67189-67707 bp Gene: COG1203:cas3 Type: Type-I Location: 67755-70076 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 70087-70788 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 70790-71704 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 71706-73556 bp Gene: pfam01881:cas6 Type: other Location: 73562-74356 bp Gene: pfam13280:WYL Type: other Location: 74377-75291 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64154-65753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHH01000084.1 Clostridioides difficile CD88 gcdCD88.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 19666 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2000-2160 bp Zoom in on locus 1 x3 CRISPR array Location: 2000-2160 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2000-2160 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2000-2160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHH01000066.1 Clostridioides difficile CD88 gcdCD88.contig.66, whole genome shotgun sequence

⇒Summary: seq-len = 11512 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3871-5021 bp Zoom in on locus 1 x18 CRISPR array Location: 3871-5021 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3871-5021 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3871-5021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHH01000048.1 Clostridioides difficile CD88 gcdCD88.contig.47, whole genome shotgun sequence

⇒Summary: seq-len = 12276 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10205-11090 bp Zoom in on locus 1 x14 CRISPR array Location: 10205-11090 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 10205-11090 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10205-11090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVHH01000106.1 Clostridioides difficile CD88 gcdCD88.contig.106, whole genome shotgun sequence

⇒Summary: seq-len = 6034 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4028-4385 bp Zoom in on locus 1 x6 CRISPR array Location: 4028-4385 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4028-4385 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4028-4385 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVHH01000062.1 Clostridioides difficile CD88 gcdCD88.contig.62, whole genome shotgun sequence

⇒Summary: seq-len = 46500 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43047-45299 bp Zoom in on locus 1 x7 x4 CRISPR array Location: 43047-43471 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 43047-43471 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 45075-45299 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 45075-45299 bp Num of repeats: 4 Spacers: s7-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43047-43471 bp]: array | spacers
           [Locus range 45075-45299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)