CRISPRone

CRISPRone report for GCA_000455505.1_B3-20M

♦ Seq 1: CBMU010000083.1 Pseudomonas aeruginosa B3-20M WGS project CBMU00000000 data, contig 179_B3-20M, whole genome shotgun sequence

⇒Summary: seq-len = 15379 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-7757 bp Zoom in on locus 1 x19 Gene: COG1203:cas3 Type: Type-I Location: 1-2178 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2589-3890 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3877-4860 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4871-5899 bp Gene: cd09739:cas6f Type: other Location: 5903-6466 bp CRISPR array Location: 6650-7757 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 6650-7757 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6650-7757 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CBMU010000208.1 Pseudomonas aeruginosa B3-20M WGS project CBMU00000000 data, contig 454_B3-20M, whole genome shotgun sequence

⇒Summary: seq-len = 2967 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2877 bp Zoom in on locus 1 x10 Gene: cd09673:cas3f Type: Subtype-I-F Location: 2-1087 bp Gene: cd09718:cas1 Type: universal Location: 1084-2058 bp CRISPR array Location: 2310-2877 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2310-2877 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2310-2877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CBMU010000123.1 Pseudomonas aeruginosa B3-20M WGS project CBMU00000000 data, contig 263_B3-20M, whole genome shotgun sequence

⇒Summary: seq-len = 1361 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 523-1271 bp Zoom in on locus 1 x13 CRISPR array Location: 523-1271 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 523-1271 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 523-1271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)