CRISPRone

CRISPRone report for GCA_000455545.1_B3-1811

♦ Seq 1: CBMP010000233.1 Pseudomonas aeruginosa B3-1811 WGS project CBMP000000000 data, contig 416_B3-1811, whole genome shotgun sequence

⇒Summary: seq-len = 2779 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2687 bp Zoom in on locus 1 x10 Gene: cd09673:cas3f Type: Subtype-I-F Location: 1-897 bp Gene: cd09718:cas1 Type: universal Location: 894-1868 bp CRISPR array Location: 2120-2687 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2120-2687 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2120-2687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CBMP010000081.1 Pseudomonas aeruginosa B3-1811 WGS project CBMP000000000 data, contig 148_B3-1811, whole genome shotgun sequence

⇒Summary: seq-len = 9088 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-7951 bp Zoom in on locus 1 x19 Gene: COG1203:cas3 Type: Type-I Location: 3-2372 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2783-4084 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 4071-5054 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 5065-6093 bp Gene: cd09739:cas6f Type: other Location: 6097-6660 bp CRISPR array Location: 6844-7951 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 6844-7951 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6844-7951 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CBMP010000116.1 Pseudomonas aeruginosa B3-1811 WGS project CBMP000000000 data, contig 214_B3-1811, whole genome shotgun sequence

⇒Summary: seq-len = 1365 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 525-1273 bp Zoom in on locus 1 x13 CRISPR array Location: 525-1273 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 525-1273 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 525-1273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)