CRISPRone

CRISPRone report for GCA_000455705.1_ASM45570v1

♦ Seq 1: ATAQ01000274.1 Pseudomonas aeruginosa WC55 contig37, whole genome shotgun sequence

⇒Summary: seq-len = 81246 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37451-48371 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 37451-38619 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37451-38619 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 38802-39365 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39369-40397 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40408-41391 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41378-42682 bp Gene: COG1203:cas3 Type: Type-I Location: 42740-45970 bp Gene: cd09718:cas1 Type: universal Location: 45967-46941 bp CRISPR array Location: 47202-48371 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 47202-48371 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37451-38619 bp]: array | spacers
           [Locus range 47202-48371 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: ATAQ01000303.1 Pseudomonas aeruginosa WC55 contig63, whole genome shotgun sequence

⇒Summary: seq-len = 98837 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12147-22503 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 12147-13151 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 12147-13151 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 13216-13515 bp Gene: cd09719:cas1 Type: universal Location: 13512-13823 bp Gene: pfam08798:cas6e Type: other Location: 13850-14389 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 14436-15098 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15100-16242 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 16252-16782 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 16779-18347 bp Gene: cd09641:cas3HD Type: Type-I Location: 18350-21031 bp CRISPR array Location: 21804-22503 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 21804-22503 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12147-13151 bp]: array | spacers
           [Locus range 21804-22503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)