CRISPRone

CRISPRone report for GCA_000473625.2_ASM47362v2

♦ Seq 1: AWZK01000042.1 Clostridioides difficile P37 gcdP37.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 64692 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18784-19867 bp Zoom in on locus 1 x17 CRISPR array Location: 18784-19867 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 18784-19867 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18784-19867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AWZK01000038.1 Clostridioides difficile P37 gcdP37.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 81114 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18282-18906 bp Zoom in on locus 1 x10 CRISPR array Location: 18282-18906 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18282-18906 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18282-18906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AWZK01000046.1 Clostridioides difficile P37 gcdP37.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 513664 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257070-267293 bp Zoom in on locus 1 x11 CRISPR array Location: 257070-257756 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 257070-257756 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 257940-258206 bp Gene: cd09722:cas1 Type: universal Location: 258209-259189 bp Gene: pfam01930:cas4 Type: Type-I Location: 259192-259710 bp Gene: COG1203:cas3 Type: Type-I Location: 259758-262079 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262090-262791 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262793-263386 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 263383-263706 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263708-265558 bp Gene: pfam01881:cas6 Type: other Location: 265564-266358 bp Gene: pfam13280:WYL Type: other Location: 266379-267293 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257070-257756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AWZK01000044.1 Clostridioides difficile P37 gcdP37.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 288359 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160464-168772 bp 2 Locus 2: 242053-242146 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 160464-162872 bp Gene: cd09693:cas5 Type: Type-I Location: 162899-163696 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163712-164218 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164323-164724 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164744-166210 bp Gene: pfam01881:cas6 Type: other Location: 166215-166952 bp Gene: unk Type: unknown Location: 167053-167229 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 167663-168772 bp CRISPR array Location: 242053-242146 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 242053-242146 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 242053-242146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AWZK01000033.1 Clostridioides difficile P37 gcdP37.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 17998 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1862-2280 bp Zoom in on locus 1 x7 CRISPR array Location: 1862-2280 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1862-2280 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1862-2280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AWZK01000032.1 Clostridioides difficile P37 gcdP37.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 180173 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42434-42728 bp Zoom in on locus 1 x5 CRISPR array Location: 42434-42728 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 42434-42728 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42434-42728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AWZK01000043.1 Clostridioides difficile P37 gcdP37.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 259272 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255089-255909 bp Zoom in on locus 1 x13 CRISPR array Location: 255089-255909 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 255089-255909 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 255089-255909 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AWZK01000036.1 Clostridioides difficile P37 gcdP37.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 152814 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88194-89015 bp Zoom in on locus 1 x13 CRISPR array Location: 88194-89015 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 88194-89015 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88194-89015 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AWZK01000039.1 Clostridioides difficile P37 gcdP37.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 170401 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112201-113606 bp Zoom in on locus 1 x22 CRISPR array Location: 112201-113606 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 112201-113606 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112201-113606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)