CRISPRone

CRISPRone report for GCA_000473665.2_ASM47366v2

♦ Seq 1: AWZL01000053.1 Clostridioides difficile P64 gcdP64.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 507749 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254056-265126 bp 2 Locus 2: 487464-487557 bp Zoom in on locus 1 x24 Zoom in on locus 2 x2 CRISPR array Location: 254056-255588 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 254056-255588 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 255772-256038 bp Gene: cd09722:cas1 Type: universal Location: 256041-257021 bp Gene: pfam01930:cas4 Type: Type-I Location: 257024-257542 bp Gene: COG1203:cas3 Type: Type-I Location: 257590-259911 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259922-260623 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260625-261539 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261541-263391 bp Gene: pfam01881:cas6 Type: other Location: 263397-264191 bp Gene: pfam13280:WYL Type: other Location: 264212-265126 bp CRISPR array Location: 487464-487557 bp Num of repeats: 2 Spacers: s24-s24 CRISPR array Location: 487464-487557 bp Num of repeats: 2 Spacers: s24-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254056-255588 bp]: array | spacers
           [Locus range 487464-487557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AWZL01000047.1 Clostridioides difficile P64 gcdP64.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 5304 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3819-4704 bp Zoom in on locus 1 x14 CRISPR array Location: 3819-4704 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3819-4704 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3819-4704 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AWZL01000042.1 Clostridioides difficile P64 gcdP64.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 44823 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119-476 bp Zoom in on locus 1 x6 CRISPR array Location: 119-476 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 119-476 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 119-476 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AWZL01000027.1 Clostridioides difficile P64 gcdP64.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 224937 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137895-138977 bp Zoom in on locus 1 x17 CRISPR array Location: 137895-138977 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 137895-138977 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 137895-138977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AWZL01000034.1 Clostridioides difficile P64 gcdP64.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 65180 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10-1160 bp Zoom in on locus 1 x18 CRISPR array Location: 10-1160 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 10-1160 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10-1160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AWZL01000022.1 Clostridioides difficile P64 gcdP64.contig.21, whole genome shotgun sequence

⇒Summary: seq-len = 10059 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6628-8816 bp Zoom in on locus 1 x7 x3 CRISPR array Location: 6628-7052 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6628-7052 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 8655-8816 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 8655-8816 bp Num of repeats: 3 Spacers: s7-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6628-7052 bp]: array | spacers
           [Locus range 8655-8816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AWZL01000041.1 Clostridioides difficile P64 gcdP64.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 318228 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 235996-244317 bp 2 Locus 2: 317599-317956 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 235996-238404 bp Gene: cd09693:cas5 Type: Type-I Location: 238431-239228 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 239244-240260 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 240280-241755 bp Gene: pfam01881:cas6 Type: other Location: 241760-242497 bp Gene: unk Type: unknown Location: 242598-242774 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 243208-244317 bp CRISPR array Location: 317599-317956 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 317599-317956 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 317599-317956 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AWZL01000028.1 Clostridioides difficile P64 gcdP64.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 188411 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124161-124654 bp Zoom in on locus 1 x8 CRISPR array Location: 124161-124654 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 124161-124654 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124161-124654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AWZL01000038.1 Clostridioides difficile P64 gcdP64.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 93241 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 948-1108 bp Zoom in on locus 1 x3 CRISPR array Location: 948-1108 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 948-1108 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 948-1108 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AWZL01000029.1 Clostridioides difficile P64 gcdP64.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 29358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18230-18721 bp Zoom in on locus 1 x8 CRISPR array Location: 18230-18721 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18230-18721 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18230-18721 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AWZL01000003.1 Clostridioides difficile P64 gcdP64.contig.2, whole genome shotgun sequence

⇒Summary: seq-len = 20894 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18095-20266 bp Zoom in on locus 1 x4 x4 CRISPR array Location: 18095-18320 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18095-18320 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20042-20266 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 20042-20266 bp Num of repeats: 4 Spacers: s4-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18095-18320 bp]: array | spacers
           [Locus range 20042-20266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AWZL01000040.1 Clostridioides difficile P64 gcdP64.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 8799 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4839-5455 bp Zoom in on locus 1 x10 CRISPR array Location: 4839-5455 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4839-5455 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4839-5455 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)