CRISPRone

CRISPRone report for GCA_000473685.2_ASM47368v2

♦ Seq 1: AWZM01000038.1 Clostridioides difficile P68 gcdP68.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 104056 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12417-12709 bp 2 Locus 2: 58389-59472 bp Zoom in on locus 1 x5 Zoom in on locus 2 x17 CRISPR array Location: 12417-12709 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 12417-12709 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 58389-59472 bp Num of repeats: 17 Spacers: s5-s20 CRISPR array Location: 58389-59472 bp Num of repeats: 17 Spacers: s5-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12417-12709 bp]: array | spacers
           [Locus range 58389-59472 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AWZM01000022.1 Clostridioides difficile P68 gcdP68.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 38697 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29041-29202 bp Zoom in on locus 1 x3 CRISPR array Location: 29041-29202 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29041-29202 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29041-29202 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AWZM01000030.1 Clostridioides difficile P68 gcdP68.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 153284 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61139-61960 bp Zoom in on locus 1 x13 CRISPR array Location: 61139-61960 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 61139-61960 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61139-61960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AWZM01000044.1 Clostridioides difficile P68 gcdP68.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 414106 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256339-266563 bp Zoom in on locus 1 x11 CRISPR array Location: 256339-257025 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 256339-257025 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 257209-257475 bp Gene: cd09722:cas1 Type: universal Location: 257478-258458 bp Gene: pfam01930:cas4 Type: Type-I Location: 258461-258979 bp Gene: COG1203:cas3 Type: Type-I Location: 259027-261348 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 261359-262060 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262062-262976 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 262978-264828 bp Gene: pfam01881:cas6 Type: other Location: 264834-265628 bp Gene: pfam13280:WYL Type: other Location: 265649-266563 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256339-257025 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AWZM01000031.1 Clostridioides difficile P68 gcdP68.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 29962 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18246-19326 bp Zoom in on locus 1 x17 CRISPR array Location: 18246-19326 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 18246-19326 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18246-19326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AWZM01000040.1 Clostridioides difficile P68 gcdP68.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 8856 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4710-5530 bp Zoom in on locus 1 x13 CRISPR array Location: 4710-5530 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4710-5530 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4710-5530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AWZM01000041.1 Clostridioides difficile P68 gcdP68.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 287978 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160117-168426 bp 2 Locus 2: 241706-241799 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 160117-162525 bp Gene: cd09693:cas5 Type: Type-I Location: 162552-163349 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163365-164378 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164398-165864 bp Gene: pfam01881:cas6 Type: other Location: 165869-166606 bp Gene: unk Type: unknown Location: 166707-166883 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 167317-168426 bp CRISPR array Location: 241706-241799 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 241706-241799 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241706-241799 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AWZM01000035.1 Clostridioides difficile P68 gcdP68.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 118886 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61050-62325 bp Zoom in on locus 1 x20 CRISPR array Location: 61050-62325 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 61050-62325 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61050-62325 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)