CRISPRone

CRISPRone report for GCA_000480535.1_Pseu_aeru_3098_V1

♦ Seq 1: KI518724.1 Pseudomonas aeruginosa M9A.1 genomic scaffold adget-supercont1.2, whole genome shotgun sequence

⇒Summary: seq-len = 1850265 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 717019-727285 bp Zoom in on locus 1 x13 x5 CRISPR array Location: 717019-717779 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 717019-717779 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 717844-718143 bp Gene: cd09719:cas1 Type: universal Location: 718140-719030 bp Gene: pfam08798:cas6e Type: other Location: 719057-719596 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 719643-720305 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 720307-721449 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 721459-721989 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 721986-723554 bp Gene: cd09641:cas3HD Type: Type-I Location: 723557-726238 bp CRISPR array Location: 727013-727285 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 727013-727285 bp Num of repeats: 5 Spacers: s13-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 717019-717779 bp]: array | spacers
           [Locus range 727013-727285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KI518722.1 Pseudomonas aeruginosa M9A.1 genomic scaffold adget-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 2551828 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1108525-1109693 bp Zoom in on locus 1 x20 CRISPR array Location: 1108525-1109693 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1108525-1109693 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1108525-1109693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)