CRISPRone

CRISPRone report for GCA_000480685.1_Pseu_aeru_BL23_V1

♦ Seq 1: KI518766.1 Pseudomonas aeruginosa BL23 genomic scaffold adgfb-supercont1.10, whole genome shotgun sequence

⇒Summary: seq-len = 171173 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125062-131271 bp Zoom in on locus 1 x8 Gene: pfam03787:csm3gr7 Type: Type-III Location: 125062-126162 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 126150-126704 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 126718-128931 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 128931-129611 bp Gene: COG1518:cas1 Type: universal Location: 129616-130485 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 130466-130801 bp CRISPR array Location: 130825-131271 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 130825-131271 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 130825-131271 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KI518765.1 Pseudomonas aeruginosa BL23 genomic scaffold adgfb-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1223280 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 809254-810003 bp Zoom in on locus 1 x13 CRISPR array Location: 809254-810003 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 809254-810003 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 809254-810003 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KI518774.1 Pseudomonas aeruginosa BL23 genomic scaffold adgfb-supercont1.3, whole genome shotgun sequence

⇒Summary: seq-len = 1074159 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138321-156617 bp Zoom in on locus 1 Gene: mkCas0090:PD-DExK Type: other Location: 138321-139046 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 147917-148237 bp Gene: pfam00078:RT Type: other Location: 154899-156617 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)