CRISPRone

CRISPRone report for GCA_000480905.1_Pseu_aeru_BL12_V1

♦ Seq 1: KI518870.1 Pseudomonas aeruginosa BL12 genomic scaffold adgfc-supercont1.5, whole genome shotgun sequence

⇒Summary: seq-len = 749681 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 611789-622606 bp Zoom in on locus 1 x16 x11 CRISPR array Location: 611789-612732 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 611789-612732 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 612797-613096 bp Gene: cd09719:cas1 Type: universal Location: 613093-613983 bp Gene: pfam08798:cas6e Type: other Location: 614010-614549 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 614596-615258 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 615260-616402 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 616412-616942 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 616939-618507 bp Gene: cd09641:cas3HD Type: Type-I Location: 618510-621191 bp CRISPR array Location: 621967-622606 bp Num of repeats: 11 Spacers: s16-s25 CRISPR array Location: 621967-622606 bp Num of repeats: 11 Spacers: s16-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 611789-612732 bp]: array | spacers
           [Locus range 621967-622606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KI518856.1 Pseudomonas aeruginosa BL12 genomic scaffold adgfc-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 2109987 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240657-251242 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 240657-241526 bp Gene: pfam00078:RT Type: other Location: 246435-247703 bp Gene: unk Type: unknown Location: 247853-248251 bp Gene: unk Type: unknown Location: 248435-248614 bp Gene: cls000170:cas4 Type: Type-I Location: 249698-251242 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)