CRISPRone

CRISPRone report for GCA_000481125.1_Pseu_aeru_BL01_V1

♦ Seq 1: KI518955.1 Pseudomonas aeruginosa BL01 genomic scaffold adgeu-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 4886618 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1448183-1449353 bp 2 Locus 2: 4251831-4263458 bp Zoom in on locus 1 x20 Zoom in on locus 2 x23 x2 x8 CRISPR array Location: 1448183-1449353 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1448183-1449353 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 4251831-4253201 bp Num of repeats: 23 Spacers: s20-s41 CRISPR array Location: 4251831-4253201 bp Num of repeats: 23 Spacers: s20-s41 Gene: pfam09707:cas2 Type: universal Location: 4253266-4253565 bp Gene: cd09719:cas1 Type: universal Location: 4253562-4254452 bp Gene: pfam08798:cas6e Type: other Location: 4254479-4255018 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4255065-4255727 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4255729-4256871 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4256881-4257411 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4257408-4258976 bp Gene: cd09641:cas3HD Type: Type-I Location: 4259337-4262045 bp CRISPR array Location: 4262819-4262908 bp Num of repeats: 2 Spacers: s42-s42 CRISPR array Location: 4262819-4262908 bp Num of repeats: 2 Spacers: s42-s42 CRISPR array Location: 4263003-4263458 bp Num of repeats: 8 Spacers: s43-s49 CRISPR array Location: 4263003-4263458 bp Num of repeats: 8 Spacers: s43-s49 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1448183-1449353 bp]: array | spacers
           [Locus range 4251831-4253201 bp]: array | spacers
           [Locus range 4262819-4262908 bp]: array | spacers
           [Locus range 4263003-4263458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)