CRISPRone

CRISPRone report for GCA_000481145.1_Pseu_aeru_BWH028_V1

♦ Seq 1: KI518965.1 Pseudomonas aeruginosa BWHPSA028 genomic scaffold adgfi-supercont1.2, whole genome shotgun sequence

⇒Summary: seq-len = 1257250 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 952402-962962 bp Zoom in on locus 1 x6 x2 x12 CRISPR array Location: 952402-952735 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 952402-952735 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 953521-953610 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 953521-953610 bp Num of repeats: 2 Spacers: s6-s6 Gene: pfam09707:cas2 Type: universal Location: 953675-953974 bp Gene: cd09719:cas1 Type: universal Location: 953971-954282 bp Gene: pfam08798:cas6e Type: other Location: 954309-954848 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 954895-955557 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 955559-956701 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 956711-957241 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 957238-958806 bp Gene: cd09641:cas3HD Type: Type-I Location: 958809-961490 bp CRISPR array Location: 962263-962962 bp Num of repeats: 12 Spacers: s7-s17 CRISPR array Location: 962263-962962 bp Num of repeats: 12 Spacers: s7-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 952402-952735 bp]: array | spacers
           [Locus range 953521-953610 bp]: array | spacers
           [Locus range 962263-962962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KI518959.1 Pseudomonas aeruginosa BWHPSA028 genomic scaffold adgfi-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 2517354 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2255864-2266784 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 2255864-2257032 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 2255864-2257032 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 2257215-2257778 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2257782-2258810 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2258821-2259804 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2259791-2261095 bp Gene: COG1203:cas3 Type: Type-I Location: 2261153-2264383 bp Gene: cd09718:cas1 Type: universal Location: 2264380-2265354 bp CRISPR array Location: 2265615-2266784 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 2265615-2266784 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2255864-2257032 bp]: array | spacers
           [Locus range 2265615-2266784 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KI518960.1 Pseudomonas aeruginosa BWHPSA028 genomic scaffold adgfi-supercont1.10, whole genome shotgun sequence

⇒Summary: seq-len = 149762 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127019-132491 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 127019-127669 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 127676-128719 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 128719-129474 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 129503-130228 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 130317-132491 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)