CRISPRone

CRISPRone report for GCA_000481285.1_Pseu_aeru_BWH021_V1

♦ Seq 1: KI519023.1 Pseudomonas aeruginosa BWHPSA021 genomic scaffold adgeQ-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 5702272 bp; # of CRISPR array = 4; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 727365-727994 bp 2 Locus 2: 2079752-2091585 bp Zoom in on locus 1 x11 Zoom in on locus 2 x16 x7 x23 CRISPR array Location: 727365-727994 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 727365-727994 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2079752-2080681 bp Num of repeats: 16 Spacers: s11-s25 CRISPR array Location: 2079752-2080681 bp Num of repeats: 16 Spacers: s11-s25 CRISPR array Location: 2080915-2081303 bp Num of repeats: 7 Spacers: s26-s31 CRISPR array Location: 2080915-2081303 bp Num of repeats: 7 Spacers: s26-s31 Gene: cd09739:cas6f Type: other Location: 2081487-2082050 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2082054-2083082 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2083093-2084076 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2084063-2085364 bp Gene: COG1203:cas3 Type: Type-I Location: 2085775-2089005 bp Gene: cd09718:cas1 Type: universal Location: 2089002-2089976 bp CRISPR array Location: 2090237-2091585 bp Num of repeats: 23 Spacers: s32-s53 CRISPR array Location: 2090237-2091585 bp Num of repeats: 23 Spacers: s32-s53 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 727365-727994 bp]: array | spacers
           [Locus range 2079752-2080681 bp]: array | spacers
           [Locus range 2080915-2081303 bp]: array | spacers
           [Locus range 2090237-2091585 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)