CRISPRone

CRISPRone report for GCA_000481405.1_Pseu_aeru_BWH015_V1

♦ Seq 1: KI519072.1 Pseudomonas aeruginosa BWHPSA015 genomic scaffold adggh-supercont1.2, whole genome shotgun sequence

⇒Summary: seq-len = 2939655 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1066525-1075833 bp Zoom in on locus 1 x13 x7 CRISPR array Location: 1066525-1067355 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1066525-1067355 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1067627-1068057 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 1067627-1068057 bp Num of repeats: 7 Spacers: s13-s18 Gene: cd09725:cas2 Type: universal Location: 1068239-1068529 bp Gene: cd09721:cas1 Type: universal Location: 1068539-1069462 bp Gene: pfam01930:cas4 Type: Type-I Location: 1069582-1070214 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 1070233-1071102 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 1071114-1072877 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 1072874-1073548 bp Gene: cd09641:cas3HD Type: Type-I Location: 1073599-1075833 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1066525-1067355 bp]: array | spacers
           [Locus range 1067627-1068057 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KI519071.1 Pseudomonas aeruginosa BWHPSA015 genomic scaffold adggh-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 3479107 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1986638-1987267 bp Zoom in on locus 1 x11 CRISPR array Location: 1986638-1987267 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1986638-1987267 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1986638-1987267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)