CRISPRone

CRISPRone report for GCA_000481825.1_Pseu_aeru_S54485_V1

♦ Seq 1: KI519256.1 Pseudomonas aeruginosa S54485 genomic scaffold adgfS-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 3108348 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239483-249418 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 239483-241756 bp Gene: unk Type: unknown Location: 241753-243432 bp Gene: unk Type: unknown Location: 244810-245778 bp Gene: pfam13280:WYL Type: other Location: 245837-246712 bp Gene: unk Type: unknown Location: 246888-247949 bp Gene: unk Type: unknown Location: 247964-248341 bp Gene: pfam13280:WYL Type: other Location: 248522-249418 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KI519257.1 Pseudomonas aeruginosa S54485 genomic scaffold adgfS-supercont1.2, whole genome shotgun sequence

⇒Summary: seq-len = 1806559 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1076161-1086746 bp 2 Locus 2: 1565901-1566409 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1076161-1077030 bp Gene: pfam00078:RT Type: other Location: 1081939-1083207 bp Gene: unk Type: unknown Location: 1083357-1083755 bp Gene: unk Type: unknown Location: 1083939-1084118 bp Gene: cls000170:cas4 Type: Type-I Location: 1085202-1086746 bp CRISPR array Location: 1565901-1566409 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1565901-1566409 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1565901-1566409 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)