CRISPRone

CRISPRone report for GCA_000481845.1_Pseu_aeru_UDL_V1

♦ Seq 1: KI519264.1 Pseudomonas aeruginosa UDL genomic scaffold adgeV-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 4810656 bp; # of CRISPR array = 6; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 613553-625735 bp 2 Locus 2: 2008891-2019789 bp 3 Locus 3: 3321566-3323673 bp Zoom in on locus 1 x17 x26 Zoom in on locus 2 x7 x27 Zoom in on locus 3 x3 x12 CRISPR array Location: 613553-614558 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 613553-614558 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09641:cas3HD Type: Type-I Location: 615333-618041 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 618403-619971 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 619968-620498 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 620508-621650 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 621652-622314 bp Gene: pfam08798:cas6e Type: other Location: 622289-622900 bp Gene: cd09719:cas1 Type: universal Location: 622927-623817 bp Gene: pfam09707:cas2 Type: universal Location: 623814-624113 bp CRISPR array Location: 624178-625735 bp Num of repeats: 26 Spacers: s17-s41 CRISPR array Location: 624178-625735 bp Num of repeats: 26 Spacers: s17-s41 CRISPR array Location: 2008891-2009279 bp Num of repeats: 7 Spacers: s42-s47 CRISPR array Location: 2008891-2009279 bp Num of repeats: 7 Spacers: s42-s47 Gene: cd09718:cas1 Type: universal Location: 2009530-2010504 bp Gene: COG1203:cas3 Type: Type-I Location: 2010501-2013731 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2014142-2015443 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2015430-2016413 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2016424-2017452 bp Gene: cd09739:cas6f Type: other Location: 2017456-2018019 bp CRISPR array Location: 2018203-2019789 bp Num of repeats: 27 Spacers: s48-s73 CRISPR array Location: 2018203-2019789 bp Num of repeats: 27 Spacers: s48-s73 CRISPR array Location: 3321566-3321713 bp Num of repeats: 3 Spacers: s74-s75 CRISPR array Location: 3321566-3321713 bp Num of repeats: 3 Spacers: s74-s75 CRISPR array Location: 3322985-3323673 bp Num of repeats: 12 Spacers: s76-s86 CRISPR array Location: 3322985-3323673 bp Num of repeats: 12 Spacers: s76-s86 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 613553-614558 bp]: array | spacers
           [Locus range 624178-625735 bp]: array | spacers
           [Locus range 2008891-2009279 bp]: array | spacers
           [Locus range 2018203-2019789 bp]: array | spacers
           [Locus range 3321566-3321713 bp]: array | spacers
           [Locus range 3322985-3323673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)