CRISPRone

CRISPRone report for GCA_000481985.1_Pseu_aeru_MSH3_V1

♦ Seq 1: KI519298.1 Pseudomonas aeruginosa MSH3 genomic scaffold adgeF-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 5470903 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2617283-2626517 bp 2 Locus 2: 3988547-3989114 bp Zoom in on locus 1 x3 x9 Zoom in on locus 2 x10 CRISPR array Location: 2617283-2617431 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2617283-2617431 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 2617688-2618662 bp Gene: COG1203:cas3 Type: Type-I Location: 2618659-2621889 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2621947-2623251 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2623238-2624221 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2624232-2625260 bp Gene: cd09739:cas6f Type: other Location: 2625264-2625827 bp CRISPR array Location: 2626011-2626517 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 2626011-2626517 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 3988547-3989114 bp Num of repeats: 10 Spacers: s11-s19 CRISPR array Location: 3988547-3989114 bp Num of repeats: 10 Spacers: s11-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2617283-2617431 bp]: array | spacers
           [Locus range 2626011-2626517 bp]: array | spacers
           [Locus range 3988547-3989114 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)