CRISPRone

CRISPRone report for GCA_000496455.2_ASM49645v2

♦ Seq 1: CP013993.1 Pseudomonas aeruginosa DHS01, complete genome

⇒Summary: seq-len = 7055752 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1186830-1197415 bp 2 Locus 2: 4600982-4611493 bp 3 Locus 3: 5448225-5455013 bp Zoom in on locus 1 Zoom in on locus 2 x13 x9 Zoom in on locus 3 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1186830-1187699 bp Gene: pfam00078:RT Type: other Location: 1192608-1193876 bp Gene: unk Type: unknown Location: 1194026-1194424 bp Gene: unk Type: unknown Location: 1194608-1194787 bp Gene: cls000170:cas4 Type: Type-I Location: 1195871-1197415 bp CRISPR array Location: 4600982-4601743 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4600982-4601743 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 4601808-4602107 bp Gene: cd09719:cas1 Type: universal Location: 4602104-4602994 bp Gene: pfam08798:cas6e Type: other Location: 4603021-4603560 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4603607-4604269 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4604271-4605413 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4605423-4605953 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4605950-4607518 bp Gene: cd09641:cas3HD Type: Type-I Location: 4607521-4610202 bp CRISPR array Location: 4610976-4611493 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 4610976-4611493 bp Num of repeats: 9 Spacers: s13-s20 Gene: cd09696:cas3 Type: Subtype-I-U Location: 5448225-5451446 bp Gene: pfam13280:WYL Type: other Location: 5451459-5452367 bp Gene: unk Type: unknown Location: 5452647-5453537 bp Gene: unk Type: unknown Location: 5453672-5453989 bp Gene: mkCas0115:csx3 Type: other Location: 5453982-5455013 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4600982-4601743 bp]: array | spacers
           [Locus range 4610976-4611493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)