CRISPRone

CRISPRone report for GCA_000499505.1_T20

♦ Seq 1: HF922497.1 Clostridium difficile T20 genomic scaffold, 1854_111, whole genome shotgun sequence

⇒Summary: seq-len = 63894 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61689-63717 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 61689-61979 bp Gene: cd09722:cas1 Type: universal Location: 62190-63197 bp Gene: pfam01930:cas4 Type: Type-I Location: 63223-63717 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF922498.1 Clostridium difficile T20 genomic scaffold, 1854_112, whole genome shotgun sequence

⇒Summary: seq-len = 74315 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218-6970 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 218-2776 bp Gene: cd09693:cas5 Type: Type-I Location: 2800-3540 bp Gene: pfam05107:cas7b Type: Type-I Location: 3542-4531 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 4524-6263 bp Gene: cd09652:cas6 Type: other Location: 6275-6970 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF922575.1 Clostridium difficile T20 genomic scaffold, 1854_189, whole genome shotgun sequence

⇒Summary: seq-len = 7909 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-94 bp Zoom in on locus 1 x2 CRISPR array Location: 0-94 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-94 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-94 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF922507.1 Clostridium difficile T20 genomic scaffold, 1854_121, whole genome shotgun sequence

⇒Summary: seq-len = 24260 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17696-24184 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17696-20104 bp Gene: cd09693:cas5 Type: Type-I Location: 20131-20928 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20944-21957 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 21976-23442 bp Gene: pfam01881:cas6 Type: other Location: 23447-24184 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF922491.1 Clostridium difficile T20 genomic scaffold, 1854_105, whole genome shotgun sequence

⇒Summary: seq-len = 45486 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5783-7827 bp 2 Locus 2: 45330-45487 bp Zoom in on locus 1 Zoom in on locus 2 x3 Gene: cd09718:cas1 Type: universal Location: 5783-7438 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 7450-7827 bp CRISPR array Location: 45330-45487 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 45330-45487 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45330-45487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: HF922539.1 Clostridium difficile T20 genomic scaffold, 1854_153, whole genome shotgun sequence

⇒Summary: seq-len = 16606 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207-9600 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 207-473 bp Gene: cd09722:cas1 Type: universal Location: 476-1456 bp Gene: pfam01930:cas4 Type: Type-I Location: 1459-1977 bp Gene: COG1203:cas3 Type: Type-I Location: 2025-4346 bp Gene: cd09693:cas5 Type: Type-I Location: 4357-5058 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5060-5974 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5976-7826 bp Gene: pfam01881:cas6 Type: other Location: 7832-8569 bp Gene: pfam13280:WYL Type: other Location: 8647-9600 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)