CRISPRone

CRISPRone report for GCA_000503175.1_Assembly_DHS29_of_Sep_2013

♦ Seq 1: AYON01000040.1 Pseudomonas aeruginosa DHS29 Contig0043, whole genome shotgun sequence

⇒Summary: seq-len = 25991 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8373-18885 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 8373-8891 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8373-8891 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 9664-12345 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12348-13916 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 13913-14443 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14453-15595 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15597-16259 bp Gene: pfam08798:cas6e Type: other Location: 16234-16845 bp Gene: cd09719:cas1 Type: universal Location: 16872-17762 bp Gene: pfam09707:cas2 Type: universal Location: 17759-18058 bp CRISPR array Location: 18123-18885 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 18123-18885 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8373-8891 bp]: array | spacers
           [Locus range 18123-18885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)