CRISPRone

CRISPRone report for GCA_000504485.1_ATCC15442

♦ Seq 1: AYUC01000013.1 Pseudomonas aeruginosa ATCC 15442 contig000013, whole genome shotgun sequence

⇒Summary: seq-len = 80794 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32853-43292 bp Zoom in on locus 1 x13 x19 CRISPR array Location: 32853-33602 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 32853-33602 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 33862-34836 bp Gene: COG1203:cas3 Type: Type-I Location: 34833-38063 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38121-39425 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39412-40395 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40406-41434 bp Gene: cd09739:cas6f Type: other Location: 41438-42001 bp CRISPR array Location: 42185-43292 bp Num of repeats: 19 Spacers: s13-s30 CRISPR array Location: 42185-43292 bp Num of repeats: 19 Spacers: s13-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32853-33602 bp]: array | spacers
           [Locus range 42185-43292 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AYUC01000037.1 Pseudomonas aeruginosa ATCC 15442 contig000038, whole genome shotgun sequence

⇒Summary: seq-len = 230627 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12137-22432 bp Zoom in on locus 1 x16 x12 CRISPR array Location: 12137-13080 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 12137-13080 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 13145-13444 bp Gene: cd09719:cas1 Type: universal Location: 13441-13752 bp Gene: pfam08798:cas6e Type: other Location: 13779-14318 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 14365-15027 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15029-16171 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 16181-16711 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 16708-18276 bp Gene: cd09641:cas3HD Type: Type-I Location: 18279-20960 bp CRISPR array Location: 21733-22432 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 21733-22432 bp Num of repeats: 12 Spacers: s16-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12137-13080 bp]: array | spacers
           [Locus range 21733-22432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)