CRISPRone

CRISPRone report for GCA_000510305.1_ASM51030v1

♦ Seq 1: CP006931.1 Pseudomonas aeruginosa SCV20265, complete genome

⇒Summary: seq-len = 6725183 bp; # of CRISPR array = 5; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1068588-1079173 bp 2 Locus 2: 1553838-1554586 bp 3 Locus 3: 3032547-3045464 bp Zoom in on locus 1 Zoom in on locus 2 x13 Zoom in on locus 3 x5 x2 x21 x4 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1068588-1069457 bp Gene: pfam00078:RT Type: other Location: 1074366-1075634 bp Gene: unk Type: unknown Location: 1075784-1076182 bp Gene: unk Type: unknown Location: 1076366-1076545 bp Gene: cls000170:cas4 Type: Type-I Location: 1077629-1079173 bp CRISPR array Location: 1553838-1554586 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1553838-1554586 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3032547-3032815 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 3032547-3032815 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 3034086-3034174 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 3034086-3034174 bp Num of repeats: 2 Spacers: s17-s17 Gene: cd09739:cas6f Type: other Location: 3034357-3034920 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3034924-3035952 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3035963-3036946 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3036933-3038237 bp Gene: COG1203:cas3 Type: Type-I Location: 3038295-3041525 bp Gene: cd09718:cas1 Type: universal Location: 3041522-3042496 bp CRISPR array Location: 3042757-3043982 bp Num of repeats: 21 Spacers: s18-s37 CRISPR array Location: 3042757-3043982 bp Num of repeats: 21 Spacers: s18-s37 CRISPR array Location: 3045255-3045464 bp Num of repeats: 4 Spacers: s38-s40 CRISPR array Location: 3045255-3045464 bp Num of repeats: 4 Spacers: s38-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1553838-1554586 bp]: array | spacers
           [Locus range 3032547-3032815 bp]: array | spacers
           [Locus range 3034086-3034174 bp]: array | spacers
           [Locus range 3042757-3043982 bp]: array | spacers
           [Locus range 3045255-3045464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)