CRISPRone

CRISPRone report for GCA_000520295.1_Pseu_aeru_BWHPSA045_V1

♦ Seq 1: KI914477.1 Pseudomonas aeruginosa BWHPSA045 genomic scaffold adkfU-supercont1.2, whole genome shotgun sequence

⇒Summary: seq-len = 1746332 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 370939-381524 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 370939-371808 bp Gene: pfam00078:RT Type: other Location: 376717-377985 bp Gene: unk Type: unknown Location: 378135-378533 bp Gene: unk Type: unknown Location: 378717-378896 bp Gene: cls000170:cas4 Type: Type-I Location: 379980-381524 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KI914476.1 Pseudomonas aeruginosa BWHPSA045 genomic scaffold adkfU-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 2664932 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2114672-2125378 bp Zoom in on locus 1 x9 x2 x9 CRISPR array Location: 2114672-2115188 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2114672-2115188 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2115538-2115628 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 2115538-2115628 bp Num of repeats: 2 Spacers: s9-s9 Gene: pfam09707:cas2 Type: universal Location: 2115693-2115992 bp Gene: cd09719:cas1 Type: universal Location: 2115989-2116879 bp Gene: pfam08798:cas6e Type: other Location: 2116906-2117445 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 2117492-2118154 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 2118156-2119298 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 2119308-2119838 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 2119835-2121403 bp Gene: cd09641:cas3HD Type: Type-I Location: 2121406-2124087 bp CRISPR array Location: 2124861-2125378 bp Num of repeats: 9 Spacers: s10-s17 CRISPR array Location: 2124861-2125378 bp Num of repeats: 9 Spacers: s10-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2114672-2115188 bp]: array | spacers
           [Locus range 2115538-2115628 bp]: array | spacers
           [Locus range 2124861-2125378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)