CRISPRone

CRISPRone report for GCA_000520355.1_Pseu_aeru_BWHPSA042_V1

♦ Seq 1: KI914512.1 Pseudomonas aeruginosa BWHPSA042 genomic scaffold adkfZ-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 3698149 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 784027-785015 bp 2 Locus 2: 3048405-3059100 bp Zoom in on locus 1 x17 Zoom in on locus 2 x16 x2 x6 CRISPR array Location: 784027-785015 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 784027-785015 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3048405-3049348 bp Num of repeats: 16 Spacers: s17-s31 CRISPR array Location: 3048405-3049348 bp Num of repeats: 16 Spacers: s17-s31 Gene: pfam09707:cas2 Type: universal Location: 3049413-3049712 bp Gene: cd09719:cas1 Type: universal Location: 3049709-3050599 bp Gene: pfam08798:cas6e Type: other Location: 3050626-3051165 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3051212-3051874 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3051876-3053018 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3053028-3053558 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3053555-3055123 bp Gene: cd09641:cas3HD Type: Type-I Location: 3055126-3057807 bp CRISPR array Location: 3058582-3058671 bp Num of repeats: 2 Spacers: s32-s32 CRISPR array Location: 3058582-3058671 bp Num of repeats: 2 Spacers: s32-s32 CRISPR array Location: 3058766-3059100 bp Num of repeats: 6 Spacers: s33-s37 CRISPR array Location: 3058766-3059100 bp Num of repeats: 6 Spacers: s33-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 784027-785015 bp]: array | spacers
           [Locus range 3048405-3049348 bp]: array | spacers
           [Locus range 3058582-3058671 bp]: array | spacers
           [Locus range 3058766-3059100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)