CRISPRone

CRISPRone report for GCA_000530295.1_E15

♦ Seq 1: HF933746.1 Clostridium difficile E15 genomic scaffold, 1837_320, whole genome shotgun sequence

⇒Summary: seq-len = 1799 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-91 bp Zoom in on locus 1 x2 CRISPR array Location: 0-91 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-91 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-91 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF933611.1 Clostridium difficile E15 genomic scaffold, 1837_185, whole genome shotgun sequence

⇒Summary: seq-len = 5500 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5339-5439 bp Zoom in on locus 1 x2 CRISPR array Location: 5339-5439 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5339-5439 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5339-5439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF933863.1 Clostridium difficile E15 genomic scaffold, 1837_437, whole genome shotgun sequence

⇒Summary: seq-len = 16232 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11050-16195 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 11050-13575 bp Gene: unk Type: unknown Location: 13646-13819 bp Gene: unk Type: unknown Location: 14006-14413 bp Gene: cd09693:cas5 Type: Type-I Location: 14463-15215 bp Gene: pfam05107:cas7b Type: Type-I Location: 15218-16195 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF933632.1 Clostridium difficile E15 genomic scaffold, 1837_206, whole genome shotgun sequence

⇒Summary: seq-len = 24332 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17770-24259 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17770-20178 bp Gene: cd09693:cas5 Type: Type-I Location: 20205-21002 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21018-22031 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22051-23517 bp Gene: pfam01881:cas6 Type: other Location: 23522-24259 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF933582.1 Clostridium difficile E15 genomic scaffold, 1837_156, whole genome shotgun sequence

⇒Summary: seq-len = 7404 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-223 bp Zoom in on locus 1 x4 CRISPR array Location: 0-223 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-223 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)