CRISPRone

CRISPRone report for GCA_000530435.1_E23

♦ Seq 1: HF923161.1 Clostridium difficile E23 genomic scaffold, 1850_120, whole genome shotgun sequence

⇒Summary: seq-len = 10269 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-164 bp Zoom in on locus 1 x3 CRISPR array Location: 1-164 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1-164 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF923160.1 Clostridium difficile E23 genomic scaffold, 1850_119, whole genome shotgun sequence

⇒Summary: seq-len = 17747 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17654-17749 bp Zoom in on locus 1 x2 CRISPR array Location: 17654-17749 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17654-17749 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17654-17749 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF923200.1 Clostridium difficile E23 genomic scaffold, 1850_159, whole genome shotgun sequence

⇒Summary: seq-len = 45912 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10685-18550 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 10685-13093 bp Gene: cd09693:cas5 Type: Type-I Location: 13120-13917 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13933-14946 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 14966-16441 bp Gene: pfam01881:cas6 Type: other Location: 16446-17183 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 17441-18550 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF923300.1 Clostridium difficile E23 genomic scaffold, 1850_259, whole genome shotgun sequence

⇒Summary: seq-len = 2962 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67-228 bp Zoom in on locus 1 x3 CRISPR array Location: 67-228 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 67-228 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 67-228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF923223.1 Clostridium difficile E23 genomic scaffold, 1850_182, whole genome shotgun sequence

⇒Summary: seq-len = 63275 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205-9586 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 205-471 bp Gene: cd09722:cas1 Type: universal Location: 474-1454 bp Gene: pfam01930:cas4 Type: Type-I Location: 1538-1975 bp Gene: COG1203:cas3 Type: Type-I Location: 2023-4344 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4355-5056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5058-5972 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5974-7851 bp Gene: pfam01881:cas6 Type: other Location: 7857-8651 bp Gene: pfam13280:WYL Type: other Location: 8672-9586 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: HF923157.1 Clostridium difficile E23 genomic scaffold, 1850_116, whole genome shotgun sequence

⇒Summary: seq-len = 7788 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-163 bp Zoom in on locus 1 x3 CRISPR array Location: 0-163 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-163 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: HF923134.1 Clostridium difficile E23 genomic scaffold, 1850_93, whole genome shotgun sequence

⇒Summary: seq-len = 4061 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62-155 bp Zoom in on locus 1 x2 CRISPR array Location: 62-155 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 62-155 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62-155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)