CRISPRone

CRISPRone report for GCA_000530595.1_E28

♦ Seq 1: HF923748.1 Clostridium difficile E28 genomic scaffold, 1851_124, whole genome shotgun sequence

⇒Summary: seq-len = 8884 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-164 bp Zoom in on locus 1 x3 CRISPR array Location: 1-164 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1-164 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF923743.1 Clostridium difficile E28 genomic scaffold, 1851_119, whole genome shotgun sequence

⇒Summary: seq-len = 7762 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-94 bp Zoom in on locus 1 x2 CRISPR array Location: 0-94 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-94 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-94 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF923798.1 Clostridium difficile E28 genomic scaffold, 1851_174, whole genome shotgun sequence

⇒Summary: seq-len = 12013 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5436-11937 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 5436-7844 bp Gene: cd09693:cas5 Type: Type-I Location: 7871-8668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 8684-9700 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 9720-11195 bp Gene: pfam01881:cas6 Type: other Location: 11200-11937 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF923774.1 Clostridium difficile E28 genomic scaffold, 1851_150, whole genome shotgun sequence

⇒Summary: seq-len = 25973 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 378-538 bp Zoom in on locus 1 x3 CRISPR array Location: 378-538 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 378-538 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 378-538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF923824.1 Clostridium difficile E28 genomic scaffold, 1851_200, whole genome shotgun sequence

⇒Summary: seq-len = 16552 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205-9586 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 205-471 bp Gene: cd09722:cas1 Type: universal Location: 474-1454 bp Gene: pfam01930:cas4 Type: Type-I Location: 1457-1975 bp Gene: COG1203:cas3 Type: Type-I Location: 2023-4344 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4355-5056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5058-5972 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5974-7851 bp Gene: pfam01881:cas6 Type: other Location: 7857-8651 bp Gene: pfam13280:WYL Type: other Location: 8672-9586 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: HF923888.1 Clostridium difficile E28 genomic scaffold, 1851_264, whole genome shotgun sequence

⇒Summary: seq-len = 594 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92-317 bp Zoom in on locus 1 x4 CRISPR array Location: 92-317 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 92-317 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92-317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: HF923836.1 Clostridium difficile E28 genomic scaffold, 1851_212, whole genome shotgun sequence

⇒Summary: seq-len = 18493 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12203-12296 bp Zoom in on locus 1 x2 CRISPR array Location: 12203-12296 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12203-12296 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12203-12296 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: HF923758.1 Clostridium difficile E28 genomic scaffold, 1851_134, whole genome shotgun sequence

⇒Summary: seq-len = 7278 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-163 bp Zoom in on locus 1 x3 CRISPR array Location: 2-163 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2-163 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)