CRISPRone

CRISPRone report for GCA_000530695.1_T19

♦ Seq 1: HF924008.1 Clostridium difficile T19 genomic scaffold, 1853_110, whole genome shotgun sequence

⇒Summary: seq-len = 7807 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-155 bp Zoom in on locus 1 x3 CRISPR array Location: 0-155 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-155 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF924093.1 Clostridium difficile T19 genomic scaffold, 1853_195, whole genome shotgun sequence

⇒Summary: seq-len = 22462 bp; # of CRISPR array = 2; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-6298 bp 2 Locus 2: 22237-22462 bp Zoom in on locus 1 x2 Zoom in on locus 2 x4 CRISPR array Location: 2-96 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2-96 bp Num of repeats: 2 Spacers: s1-s1 Gene: COG1203:cas3 Type: Type-I Location: 662-2644 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2655-3725 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3746-4894 bp Gene: pfam01881:cas6 Type: other Location: 4896-5660 bp Gene: cd09693:cas5 Type: Type-I Location: 5651-6298 bp CRISPR array Location: 22237-22462 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 22237-22462 bp Num of repeats: 4 Spacers: s2-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2-96 bp]: array | spacers
           [Locus range 22237-22462 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF924062.1 Clostridium difficile T19 genomic scaffold, 1853_164, whole genome shotgun sequence

⇒Summary: seq-len = 24368 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17793-24291 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17793-20201 bp Gene: cd09693:cas5 Type: Type-I Location: 20228-21025 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21041-22054 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22074-23549 bp Gene: pfam01881:cas6 Type: other Location: 23554-24291 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF924017.1 Clostridium difficile T19 genomic scaffold, 1853_119, whole genome shotgun sequence

⇒Summary: seq-len = 41133 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34186-34411 bp Zoom in on locus 1 x4 CRISPR array Location: 34186-34411 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 34186-34411 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34186-34411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF924092.1 Clostridium difficile T19 genomic scaffold, 1853_194, whole genome shotgun sequence

⇒Summary: seq-len = 8804 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8645-8738 bp Zoom in on locus 1 x2 CRISPR array Location: 8645-8738 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8645-8738 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8645-8738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: HF924087.1 Clostridium difficile T19 genomic scaffold, 1853_189, whole genome shotgun sequence

⇒Summary: seq-len = 128941 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205-9586 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 205-471 bp Gene: cd09722:cas1 Type: universal Location: 474-1454 bp Gene: pfam01930:cas4 Type: Type-I Location: 1457-1975 bp Gene: cd09641:cas3HD Type: Type-I Location: 2023-4344 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4355-5056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5058-5972 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5974-7851 bp Gene: pfam01881:cas6 Type: other Location: 7857-8651 bp Gene: pfam13280:WYL Type: other Location: 8672-9586 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: HF924013.1 Clostridium difficile T19 genomic scaffold, 1853_115, whole genome shotgun sequence

⇒Summary: seq-len = 4613 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4519-4614 bp Zoom in on locus 1 x2 CRISPR array Location: 4519-4614 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4519-4614 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4519-4614 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)