CRISPRone

CRISPRone report for GCA_000530795.1_T23

♦ Seq 1: HF924279.1 Clostridium difficile T23 genomic scaffold, 1857_134, whole genome shotgun sequence

⇒Summary: seq-len = 7474 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-161 bp Zoom in on locus 1 x3 CRISPR array Location: 1-161 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1-161 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-161 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF924321.1 Clostridium difficile T23 genomic scaffold, 1857_176, whole genome shotgun sequence

⇒Summary: seq-len = 52980 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17795-25670 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17795-20203 bp Gene: cd09693:cas5 Type: Type-I Location: 20230-21036 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21052-22065 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22085-23560 bp Gene: pfam01881:cas6 Type: other Location: 23565-24302 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 24561-25670 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF924409.1 Clostridium difficile T23 genomic scaffold, 1857_264, whole genome shotgun sequence

⇒Summary: seq-len = 12981 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 611-835 bp Zoom in on locus 1 x4 CRISPR array Location: 611-835 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 611-835 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 611-835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF924270.1 Clostridium difficile T23 genomic scaffold, 1857_125, whole genome shotgun sequence

⇒Summary: seq-len = 10268 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-164 bp Zoom in on locus 1 x3 CRISPR array Location: 1-164 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1-164 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF924425.1 Clostridium difficile T23 genomic scaffold, 1857_280, whole genome shotgun sequence

⇒Summary: seq-len = 1792 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1371-1728 bp Zoom in on locus 1 x3 x3 CRISPR array Location: 1371-1531 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1371-1531 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1569-1728 bp Num of repeats: 3 Spacers: s3-s4 CRISPR array Location: 1569-1728 bp Num of repeats: 3 Spacers: s3-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1371-1531 bp]: array | spacers
           [Locus range 1569-1728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: HF924435.1 Clostridium difficile T23 genomic scaffold, 1857_290, whole genome shotgun sequence

⇒Summary: seq-len = 1167 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-157 bp Zoom in on locus 1 x3 CRISPR array Location: 0-157 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-157 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: HF924297.1 Clostridium difficile T23 genomic scaffold, 1857_152, whole genome shotgun sequence

⇒Summary: seq-len = 14542 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14383-14478 bp Zoom in on locus 1 x2 CRISPR array Location: 14383-14478 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 14383-14478 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14383-14478 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: HF924266.1 Clostridium difficile T23 genomic scaffold, 1857_121, whole genome shotgun sequence

⇒Summary: seq-len = 7699 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-95 bp Zoom in on locus 1 x2 CRISPR array Location: 1-95 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-95 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-95 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: HF924295.1 Clostridium difficile T23 genomic scaffold, 1857_150, whole genome shotgun sequence

⇒Summary: seq-len = 18438 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 378-539 bp Zoom in on locus 1 x3 CRISPR array Location: 378-539 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 378-539 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 378-539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: HF924396.1 Clostridium difficile T23 genomic scaffold, 1857_251, whole genome shotgun sequence

⇒Summary: seq-len = 1325 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-90 bp Zoom in on locus 1 x2 CRISPR array Location: 0-90 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-90 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-90 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: HF924343.1 Clostridium difficile T23 genomic scaffold, 1857_198, whole genome shotgun sequence

⇒Summary: seq-len = 7072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6917-7074 bp Zoom in on locus 1 x3 CRISPR array Location: 6917-7074 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6917-7074 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6917-7074 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: HF924344.1 Clostridium difficile T23 genomic scaffold, 1857_199, whole genome shotgun sequence

⇒Summary: seq-len = 25980 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205-9586 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 205-471 bp Gene: cd09722:cas1 Type: universal Location: 474-1454 bp Gene: pfam01930:cas4 Type: Type-I Location: 1457-1975 bp Gene: COG1203:cas3 Type: Type-I Location: 2023-4344 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4355-5056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5058-5972 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5974-7851 bp Gene: pfam01881:cas6 Type: other Location: 7857-8651 bp Gene: pfam13280:WYL Type: other Location: 8672-9586 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)