CRISPRone

CRISPRone report for GCA_000530835.1_T22

♦ Seq 1: HF924662.1 Clostridium difficile T22 genomic scaffold, 1855_224, whole genome shotgun sequence

⇒Summary: seq-len = 63279 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 203-9584 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 203-469 bp Gene: cd09722:cas1 Type: universal Location: 472-1452 bp Gene: pfam01930:cas4 Type: Type-I Location: 1455-1973 bp Gene: cd09641:cas3HD Type: Type-I Location: 2021-4342 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4353-5054 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5056-5970 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5972-7849 bp Gene: pfam01881:cas6 Type: other Location: 7855-8649 bp Gene: pfam13280:WYL Type: other Location: 8670-9584 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: HF924572.1 Clostridium difficile T22 genomic scaffold, 1855_134, whole genome shotgun sequence

⇒Summary: seq-len = 7906 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-290 bp Zoom in on locus 1 x5 CRISPR array Location: 0-290 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-290 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: HF924588.1 Clostridium difficile T22 genomic scaffold, 1855_150, whole genome shotgun sequence

⇒Summary: seq-len = 7342 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-159 bp Zoom in on locus 1 x3 CRISPR array Location: 0-159 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-159 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: HF924633.1 Clostridium difficile T22 genomic scaffold, 1855_195, whole genome shotgun sequence

⇒Summary: seq-len = 53411 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17793-26139 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17793-20201 bp Gene: cd09693:cas5 Type: Type-I Location: 20228-21025 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21041-22057 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22077-23552 bp Gene: pfam01881:cas6 Type: other Location: 23557-24294 bp Gene: unk Type: unknown Location: 24395-24571 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 25030-26139 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: HF924606.1 Clostridium difficile T22 genomic scaffold, 1855_168, whole genome shotgun sequence

⇒Summary: seq-len = 13680 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 376-600 bp Zoom in on locus 1 x4 CRISPR array Location: 376-600 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 376-600 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 376-600 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: HF924661.1 Clostridium difficile T22 genomic scaffold, 1855_223, whole genome shotgun sequence

⇒Summary: seq-len = 7166 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6942-7171 bp Zoom in on locus 1 x4 CRISPR array Location: 6942-7171 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6942-7171 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6942-7171 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)